View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-25 (Length: 130)
Name: Solexa-NF5704-25
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-25 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 1e-63; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 34980423 - 34980545
Alignment:
| Q |
8 |
acatttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatg |
107 |
Q |
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| T |
34980423 |
acatttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatg |
34980522 |
T |
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| Q |
108 |
catcgttaattgcaattgttaag |
130 |
Q |
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| T |
34980523 |
catcgttaattgcaattgttaag |
34980545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 34992829 - 34992934
Alignment:
| Q |
12 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatc |
111 |
Q |
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| T |
34992829 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattctcgataatattgaatatttgaaacaatttagtcaggttgatgcatc |
34992928 |
T |
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| Q |
112 |
gttaat |
117 |
Q |
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||||| |
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| T |
34992929 |
attaat |
34992934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 27543618 - 27543714
Alignment:
| Q |
10 |
atttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgca |
109 |
Q |
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| T |
27543618 |
atttgcagaaaacaat---gtatgacatcaacataaggaacataggtacgaaattctcgatgatattgaatatttgaaacaatttggttgggttgatgca |
27543714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 27582957 - 27583038
Alignment:
| Q |
28 |
tgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgca |
109 |
Q |
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| T |
27582957 |
tgtatggcatcaacataaggaacataagtacgaaattctcgataatatttaatatttgaaacaatttggtcgggttgatgca |
27583038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 34984877 - 34984956
Alignment:
| Q |
12 |
ttgcagaaaacaatcctgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaattt |
94 |
Q |
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| T |
34984877 |
ttgcagaaaacaat---gtatggcatcaacatagggaacataggtacgaaattctcgatgattttgaatatttgaaacaattt |
34984956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 27542756 - 27542675
Alignment:
| Q |
30 |
tatggcatcaacataaggaacataggtacgaaattcttgat--tatattgaatatttgaaacaatttagtcaggttgatgca |
109 |
Q |
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| T |
27542756 |
tatggcatcaacataaggaacataggtacgaaattctcgatgatatattgaaaatttgaaacaatatggtcgggttgatgca |
27542675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 27581647 - 27581566
Alignment:
| Q |
28 |
tgtatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgca |
109 |
Q |
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| T |
27581647 |
tgtatggcatcaacataaggacaataggtacaaaattctccatgatattgaatatttgaaacaatttggtcgggttgatgca |
27581566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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