View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-26 (Length: 126)
Name: Solexa-NF5704-26
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-26 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-56
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 28114409 - 28114527
Alignment:
| Q |
8 |
aggattgagttccaatacagcaccaagtattggattgrggacattgwytctgtataagtaaaagtcaacgagctgtcttgaagtgagtgagtttcgtgtg |
107 |
Q |
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| T |
28114409 |
aggattgagttccaatacagcaccaagtattggattgaggacattgattctgtgtaagtaaaagtcaacgagctgtcttgaagtgagtgagtttcgtgtg |
28114508 |
T |
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| Q |
108 |
aaggcatcttgtatgtctt |
126 |
Q |
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||||||||||||||||||| |
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| T |
28114509 |
aaggcatcttgtatgtctt |
28114527 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-34
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 28129944 - 28130062
Alignment:
| Q |
8 |
aggattgagttccaatacagcaccaagtattggattgrggacattgwytctgtataagtaaaagtcaacgagctgtcttgaagtgagtgagtttcgtgtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| | || ||| ||||| ||||||||||||||||| ||||||||||||||| |||| | ||| |
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| T |
28129944 |
aggattgagttccaatacagcaccaagtattggattcagcaccttgattctgtgcaagtaaaagtcaacgagttgtcttgaagtgagtttgtttagagtg |
28130043 |
T |
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| Q |
108 |
aaggcatcttgtatgtctt |
126 |
Q |
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||||||||||||||||||| |
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| T |
28130044 |
aaggcatcttgtatgtctt |
28130062 |
T |
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