View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-27 (Length: 121)
Name: Solexa-NF5704-27
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 47447585 - 47447698
Alignment:
| Q |
8 |
atccatactaagaatatcctccgcactccgtactatcaataattacagttttgtaagtaccttccccaaccttaacactaatggcatcatcgttattgaa |
107 |
Q |
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| T |
47447585 |
atccatactaagaatatcctccgcactccgtactatcaataattacagttttgtaagtaccttccccaaccttaacactaatggcatcatcgttagtgaa |
47447684 |
T |
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| Q |
108 |
ctcacaggttttca |
121 |
Q |
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|||||| ||||||| |
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| T |
47447685 |
ctcacaagttttca |
47447698 |
T |
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