View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-3 (Length: 131)
Name: Solexa-NF5704-3
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-3 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 4203037 - 4203105
Alignment:
| Q |
10 |
taaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccacaa |
78 |
Q |
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| T |
4203037 |
taaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccacaa |
4203105 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 37248853 - 37248821
Alignment:
| Q |
69 |
attaccacaaacattgaaaatctagacacatca |
101 |
Q |
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| T |
37248853 |
attaccacaaacattgaaaatctagacacatca |
37248821 |
T |
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Target: scaffold0363 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 16996 - 17061
Alignment:
| Q |
13 |
ccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccacaa |
78 |
Q |
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| T |
16996 |
ccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccacaa |
17061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 14512817 - 14512752
Alignment:
| Q |
13 |
ccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccacaa |
78 |
Q |
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| T |
14512817 |
ccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccacaa |
14512752 |
T |
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