View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-30 (Length: 116)
Name: Solexa-NF5704-30
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-30 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 3e-55; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 28328978 - 28329086
Alignment:
| Q |
8 |
ggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328978 |
ggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaat |
28329077 |
T |
|
| Q |
108 |
gataatgat |
116 |
Q |
| |
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||||||||| |
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| T |
28329078 |
gataatgat |
28329086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 28506614 - 28506722
Alignment:
| Q |
8 |
ggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28506614 |
ggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaat |
28506713 |
T |
|
| Q |
108 |
gataatgat |
116 |
Q |
| |
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||||||||| |
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| T |
28506714 |
gataatgat |
28506722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 28191782 - 28191883
Alignment:
| Q |
12 |
gaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaatgata |
111 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||| |||||| |||||||||| |
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| T |
28191782 |
gaaccactaacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccgatccttataaaaggataaaattaaatgata |
28191881 |
T |
|
| Q |
112 |
at |
113 |
Q |
| |
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|| |
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|
| T |
28191882 |
at |
28191883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 8e-34
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 28525601 - 28525705
Alignment:
| Q |
12 |
gaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaatgata |
111 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||| | |||||||| |
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| T |
28525601 |
gaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaagataaaatcaaatgata |
28525700 |
T |
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| Q |
112 |
atgat |
116 |
Q |
| |
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||||| |
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| T |
28525701 |
atgat |
28525705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 28246741 - 28246850
Alignment:
| Q |
7 |
aggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaa |
106 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||| |||| || ||||||||||||| || ||| |||||||| ||||||||||||||||||| ||||| |
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| T |
28246741 |
aggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacatggatgatattcaattcaccaatccttatgaaaagataaaattaaa |
28246840 |
T |
|
| Q |
107 |
tgataatgat |
116 |
Q |
| |
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|||| ||||| |
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| T |
28246841 |
tgatgatgat |
28246850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 28239756 - 28239860
Alignment:
| Q |
12 |
gaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaatgata |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||| |||| | |||| ||||||||| |
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| T |
28239756 |
gaaccactaacagaaattggaatccattttttcaaacacgaaaataacatggatgacattcaattcaccaatccttaagaaaggttaaaattaaatgatg |
28239855 |
T |
|
| Q |
112 |
atgat |
116 |
Q |
| |
|
||||| |
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|
| T |
28239856 |
atgat |
28239860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28154923 - 28154998
Alignment:
| Q |
21 |
acagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaaga |
96 |
Q |
| |
|
||||| |||||||||||| | || || ||||||| || ||||| ||| ||| ||||||||||||||| | |||||| |
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| T |
28154923 |
acagattttggaatccatgtattaaagcagaaaagtagcatggcggatattcaattcaccgatccttgtaaaaaga |
28154998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 82; Significance: 3e-39; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 55030 - 54921
Alignment:
| Q |
7 |
aggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaa |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||| ||||| |
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| T |
55030 |
aggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaagataaaattaaa |
54931 |
T |
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| Q |
107 |
tgataatgat |
116 |
Q |
| |
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|||||||||| |
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| T |
54930 |
tgataatgat |
54921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 62; Significance: 3e-27; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 46903 - 47012
Alignment:
| Q |
7 |
aggttgaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaa |
106 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||| |||| || ||||||||||||| || ||| |||||||| ||||||||||||||||||| ||||| |
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| T |
46903 |
aggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacatggatgatattcaattcaccaatccttatgaaaagataaaattaaa |
47002 |
T |
|
| Q |
107 |
tgataatgat |
116 |
Q |
| |
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|||| ||||| |
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|
| T |
47003 |
tgatgatgat |
47012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 39918 - 40022
Alignment:
| Q |
12 |
gaaccactaacagaatttggaatccattttttcaaacagaaaaataacatggaggacattaaattcaccgatccttatgaaaagataaagttaaatgata |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||| |||| | |||| ||||||||| |
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|
| T |
39918 |
gaaccactaacagaaattggaatccattttttcaaacacgaaaataacatggatgacattcaattcaccaatccttaagaaaggttaaaattaaatgatg |
40017 |
T |
|
| Q |
112 |
atgat |
116 |
Q |
| |
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||||| |
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|
| T |
40018 |
atgat |
40022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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