View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5704-31 (Length: 121)

Name: Solexa-NF5704-31
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5704-31
Solexa-NF5704-31
[»] chr7 (6 HSPs)
chr7 (8-94)||(35789314-35789400)
chr7 (8-94)||(35798942-35799028)
chr7 (10-81)||(35760522-35760593)
chr7 (10-68)||(35755389-35755447)
chr7 (8-81)||(35785502-35785575)
chr7 (8-86)||(35765997-35766075)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 9e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-40
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 35789400 - 35789314
Alignment:
Q  8 agaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaatagtggaatttggg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35789400 agaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaatagtggaaattggg 35789314  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 35799028 - 35798942
Alignment:
Q  8 agaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaatagtggaatttggg 94  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35799028 agaatgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagtatcaaggaagaaatagtggaaattggg 35798942  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 35760593 - 35760522
Alignment:
Q  10 aatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaat 81  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  35760593 aatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataacaagtatcaaggaagaaat 35760522  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 35755447 - 35755389
Alignment:
Q  10 aatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagta 68  Q
    |||||||||||  | |||| |||||||||||| |||||||||||||| |||||||||||    
T  35755447 aatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagta 35755389  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 35785575 - 35785502
Alignment:
Q  8 agaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaat 81  Q
    |||||||||||||  | |||| |||||||||| | ||||||||  |||| |||||||| |||||||||||||||    
T  35785575 agaatgattctcagaggtggattcagagggagaactatggtggcaacttgcataacaaatatcaaggaagaaat 35785502  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 35766075 - 35765997
Alignment:
Q  8 agaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaatagtgg 86  Q
    ||||| |||||||| |  ||| |||||||||||  | ||||||  |||| |||||||||||||||||||||||| ||||    
T  35766075 agaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagtatcaaggaagaaatggtgg 35765997  T

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