View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-33 (Length: 90)
Name: Solexa-NF5704-33
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4403676 - 4403765
Alignment:
| Q |
1 |
accagtgattcttgtttctacttcttttggtgattctcttttgtgcgtcttgtgcgagatgaatcaccagcggtaatttaatttcatatt |
90 |
Q |
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| T |
4403676 |
accagtgatttttgtttctactccttttggtgattctcttttgtgcgtcttgtgcgagatgaatcaccagcggtaatttaatttcatatt |
4403765 |
T |
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Target: chr6 (Bit Score: 48; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 25740024 - 25739949
Alignment:
| Q |
12 |
ttgtttctacttcttttggtgattctcttttgtgcgtcttgtgcgagatgaatcaccagcggtaatttaatttcat |
87 |
Q |
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| T |
25740024 |
ttgtttgtactctttttggtgattctcttttgcacgtcttgtgcgagatgaatcaccggtggtaatttaatttcat |
25739949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 11002384 - 11002436
Alignment:
| Q |
25 |
ttttggtgattctcttttgtgcgtcttgtgcgagatgaatcaccagcggtaat |
77 |
Q |
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| T |
11002384 |
ttttggtgattctcttttgcacgccttgtgcgagatgaatcactagtggtaat |
11002436 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 37268879 - 37268931
Alignment:
| Q |
25 |
ttttggtgattctcttttgtgcgtcttgtgcgagatgaatcaccagcggtaat |
77 |
Q |
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| T |
37268879 |
ttttggtgattctcctctgcacgccttgtgcgagatgaatcaccagtggtaat |
37268931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 28287564 - 28287607
Alignment:
| Q |
25 |
ttttggtgattctcttttgtgcgtcttgtgcgagatgaatcacc |
68 |
Q |
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| T |
28287564 |
ttttgttgattctcttttgcaagtcttgtgcgagatgaatcacc |
28287607 |
T |
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