View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-35 (Length: 141)
Name: Solexa-NF5704-35
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 6e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 45929071 - 45928931
Alignment:
| Q |
1 |
cagagaaaaaccgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaa |
100 |
Q |
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| T |
45929071 |
cagagagaaaccgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaa |
45928972 |
T |
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| Q |
101 |
ctccaccggtgacagaaacacgaagatcaagcaatggtcgt |
141 |
Q |
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| T |
45928971 |
ctccaccggtgacagaaacacgaagatcaagcaatggtcgt |
45928931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 28073648 - 28073522
Alignment:
| Q |
10 |
accgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaactccaccgg |
109 |
Q |
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| T |
28073648 |
accgtctcagatatttgataaataatttcttcgggttcttggcctgcacgttgtatgtcacgtatcactcgctttacaaggtcaaggtgaactccacctg |
28073549 |
T |
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| Q |
110 |
tgacagaaacacgaagatcaagcaatg |
136 |
Q |
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| T |
28073548 |
taacagaaactcgaaggtccagcaatg |
28073522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 29536164 - 29536049
Alignment:
| Q |
10 |
accgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaactccaccgg |
109 |
Q |
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| T |
29536164 |
accgtctcagatatttgatgaataatttcttgaggttcttgaccagcacgttgtatatcacgtataactcgtttaataaggtcaagatgaacaccaccag |
29536065 |
T |
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| Q |
110 |
tgacagaaacacgaag |
125 |
Q |
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| T |
29536064 |
ttacagatactcgaag |
29536049 |
T |
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