View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-36 (Length: 132)
Name: Solexa-NF5704-36
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-36 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 28269404 - 28269534
Alignment:
| Q |
2 |
aggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaacgaattaaagtctccatcaaca |
101 |
Q |
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| T |
28269404 |
aggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaacgaattaaagtatccatcaaca |
28269503 |
T |
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| Q |
102 |
tttactaatcccacctccgaattgtggaatg |
132 |
Q |
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| T |
28269504 |
tttactaatcccacctgcgagttgtggaatg |
28269534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 63; Significance: 8e-28; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 79369 - 79255
Alignment:
| Q |
3 |
ggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaacgaattaaagtctccatcaacat |
102 |
Q |
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| T |
79369 |
ggtgctgatacaattatgtgacgagcatttggactaataaacccttcttccacagctttgtcaatgaatgacaacaaggagttaaagtatccatcaacat |
79270 |
T |
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| Q |
103 |
ttactaatcccacct |
117 |
Q |
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| T |
79269 |
ttactaatccaacct |
79255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 40886915 - 40887029
Alignment:
| Q |
3 |
ggtgctgatacaattatgtggcgcgcatttggactgataaatccctcttccacagctttgtcgatgaatgaaagtaacgaattaaagtctccatcaacat |
102 |
Q |
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| T |
40886915 |
ggtgctgatacaattatgtgacgagcatttggactaataaacccttcttccacagctttgtcaatgaatgacaacaaggagttaaagtatccatcaacat |
40887014 |
T |
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| Q |
103 |
ttactaatcccacct |
117 |
Q |
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| T |
40887015 |
ttactaatccaacct |
40887029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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