View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-37 (Length: 145)
Name: Solexa-NF5704-37
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-37 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 19935823 - 19935694
Alignment:
| Q |
12 |
aagaactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19935823 |
aagaactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtg |
19935724 |
T |
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| Q |
112 |
cttggtatttgtatctatggaagaggcgct |
141 |
Q |
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| T |
19935723 |
cttggtatttgtatctatggaagaggcgct |
19935694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 19966962 - 19966833
Alignment:
| Q |
12 |
aagaactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19966962 |
aagaactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtg |
19966863 |
T |
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| Q |
112 |
cttggtatttgtatctatggaagaggcgct |
141 |
Q |
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| T |
19966862 |
cttggtatttgtatctatggaagaggcgct |
19966833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 19929534 - 19929421
Alignment:
| Q |
24 |
aactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgcttggtatttgt |
123 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||| |||||| |
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| T |
19929534 |
aactatgacataactttcatcaatcaaataagagtttacatgttgatgaggcccttgtgcacgaagctagtttcttcaaaatttggtgcttggcatttgt |
19929435 |
T |
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| Q |
124 |
atctatggaagagg |
137 |
Q |
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||||| |||||||| |
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| T |
19929434 |
atctacggaagagg |
19929421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 19973577 - 19973672
Alignment:
| Q |
40 |
tcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgcttggtatttgtatctatggaaga |
135 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||| | ||||||| ||| | ||||||||||||||||||||||||||| |||| |
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| T |
19973577 |
tcatcaatcaaataagagtttacatgttgttgaggcccttgtcgatgaagcaaattttgttttcatttggtgcttggtatttgtatctatgtaaga |
19973672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 47605282 - 47605350
Alignment:
| Q |
12 |
aagaactatagcaactatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgt |
81 |
Q |
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||||||||| ||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||| |
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| T |
47605282 |
aagaactattgcaactatgccctaactttcatccat-aaattagagtttacatgttgatgaggcccttgt |
47605350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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