View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-38 (Length: 115)
Name: Solexa-NF5704-38
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-38 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 4e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 19935192 - 19935297
Alignment:
| Q |
8 |
tttctgatcctaggtaggatctagtgtttgagtgattaaaagaaataggatttgatttctaacttttgtaaatcgcaacaggacacaagtcacctcatac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19935192 |
tttctgatcctaggtaggatctagtgtttgagtgattaaaagaaataggatttgatttctaacttttgtaaatcgc--caggacacaagtcacctcatac |
19935289 |
T |
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| Q |
108 |
atcttaag |
115 |
Q |
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|||||||| |
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| T |
19935290 |
atcttaag |
19935297 |
T |
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Target: chr7; HSP #2
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 19966331 - 19966436
Alignment:
| Q |
8 |
tttctgatcctaggtaggatctagtgtttgagtgattaaaagaaataggatttgatttctaacttttgtaaatcgcaacaggacacaagtcacctcatac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19966331 |
tttctgatcctaggtaggatctagtgtttgagtgattaaaagaaataggatttgatttctaacttttgtaaatcgc--caggacacaagtcacctcatac |
19966428 |
T |
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| Q |
108 |
atcttaag |
115 |
Q |
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|||||||| |
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| T |
19966429 |
atcttaag |
19966436 |
T |
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