View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5704-41 (Length: 145)
Name: Solexa-NF5704-41
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5704-41 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 35788888 - 35789032
Alignment:
| Q |
2 |
aggagcagagataatcaagaagacaagaatcaaa-caatatagcatcatttaattgtagttgcatattcatatttcaataatagcagaactaatatatac |
100 |
Q |
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| T |
35788888 |
aggagcaaagataatcaagaagataagaatcaaaacaatgtagcatcatttaattgtagttgcatattcatatttcaataatagcataactaatatatac |
35788987 |
T |
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| Q |
101 |
attgtatcatcgatcaccacaaaggtatctaatataacatcacat |
145 |
Q |
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| T |
35788988 |
attgtatcatcgatcaccacaaaggtatctaatataacatcacat |
35789032 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 35798445 - 35798529
Alignment:
| Q |
10 |
agataatcaagaagacaagaatcaaacaatatagcatcatttaattgtagttgcatattcatatttcaataatagcagaactaat |
94 |
Q |
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| T |
35798445 |
agataatcaagaagacaagaatcaaacaatataacatcatttaattgtagtttcatattcatatttcaataatatcagtactaat |
35798529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 35760005 - 35760078
Alignment:
| Q |
22 |
agacaagaatcaaacaatatagcatcatttaattgtagttgcata-ttcatatttcaataatagcagaactaat |
94 |
Q |
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| T |
35760005 |
agacaagaataaaacagtttagcttcatttaattgtaattgcatattttatatttcaataataccagtactaat |
35760078 |
T |
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