View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-1 (Length: 160)
Name: Solexa-NF5706-1
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 7e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 46247660 - 46247812
Alignment:
| Q |
8 |
ccatgcattgggaacaaataaatagataaataaaaacacacacctagaatcaattcaacatcttcaacaaaacccaccctcagcatctcatctgcttcat |
107 |
Q |
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| T |
46247660 |
ccatgcattgggaacaaataaatagataagtaaaaacacacacctagaatcaattcaacatcttcaacaaaacccatcctcagcatctcatctgcttcat |
46247759 |
T |
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| Q |
108 |
cgaggacacgaaactttagttggctcaggtcagtacttccccgcactatatga |
160 |
Q |
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| T |
46247760 |
cgagaacacgaaactttagttggctcaggtcaatacttccccgcactatatga |
46247812 |
T |
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Target: chr6 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 20122858 - 20122948
Alignment:
| Q |
49 |
acctagaatcaattcaacatcttcaacaaaacccaccctcagcatctcatctgcttcatcgaggacacgaaactttagttggctcaggtca |
139 |
Q |
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| T |
20122858 |
acctagaatgagttcaacatcatcaacaaaacccatcctcaacatctcatctgcctcgtcaaggacacggaacttcaggtggctcaggtca |
20122948 |
T |
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