View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-12 (Length: 141)
Name: Solexa-NF5706-12
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-12 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 4600352 - 4600486
Alignment:
| Q |
7 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaag |
106 |
Q |
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| T |
4600352 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgattgttgaaaaaaagcatgataaatgaagaaaaatacaaag |
4600451 |
T |
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| Q |
107 |
gaagggttagttaatttacaggattaagcagtgcc |
141 |
Q |
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| T |
4600452 |
gaagggttagttgatttacaggattaagcagtgcc |
4600486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 4572947 - 4573081
Alignment:
| Q |
7 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagttgnnnnnnngcatgataaatgaagaaaaatacaaag |
106 |
Q |
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| T |
4572947 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatgatagtcgaaaaaaagcatgataaatgaagaaaaatacaaag |
4573046 |
T |
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| Q |
107 |
gaagggttagttaatttacaggattaagcagtgcc |
141 |
Q |
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| T |
4573047 |
gaagggttagtttatttacaggattaagcaatgcc |
4573081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 4605395 - 4605453
Alignment:
| Q |
7 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagttaggacatg |
65 |
Q |
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| T |
4605395 |
aagattgagttgtatggctacaacaatgtatcaaaacattaaacataagttaggacatg |
4605453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 4584168 - 4584219
Alignment:
| Q |
7 |
aagattgagttgtatggctacaataatttatcaaaacattaagcataagtta |
58 |
Q |
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| T |
4584168 |
aagattgagttgtgtggctgcaataattcatcaacacaataaccataagtta |
4584219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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