View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-13 (Length: 226)
Name: Solexa-NF5706-13
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 27715596 - 27715443
Alignment:
| Q |
73 |
tattcatacaatgacatgcatatctaagtagctaattgttaatgtgttgggttaggtcatattcattttcataagttttcacatgtttcgtgtttgcata |
172 |
Q |
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| T |
27715596 |
tattcatacaatgacatgcatatctaagtagctaattgttaatgtgttgggttaggtcatattcattttcataagttttcacatgtttcgtgtttgcaca |
27715497 |
T |
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| Q |
173 |
acattttcttctatttggatttgtcgatttctaccttttgacaaattactgcct |
226 |
Q |
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| T |
27715496 |
acattttcttctatttggatttgtcgatttccaccttttgacaaattactgcct |
27715443 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 34398444 - 34398511
Alignment:
| Q |
73 |
tattcatacaatgacatgcatatctaagtagctaattgttaatgtgttgggttaggtcatattcattt |
140 |
Q |
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| T |
34398444 |
tattcatacaatgctatgcatatttaagtagctaattttcgatgtattgggttatttcatattcattt |
34398511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 34262601 - 34262510
Alignment:
| Q |
58 |
gtttttagttcatattattcatacaatgacatgcatatctaagtagctaattgttaatgtgttgggttaggtcatattcattttcataagttttc |
152 |
Q |
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| T |
34262601 |
gtttttagttcatatt---cgtacaatgctatacttatttaagtagttaattttcaatgtgttggtttagttcatattcatttgcatgagttttc |
34262510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 34398564 - 34398604
Alignment:
| Q |
177 |
tttcttctatttggatttgtcgatttctaccttttgacaaa |
217 |
Q |
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| T |
34398564 |
tttcttctagttggatttgtcgatttccaccttttgccaaa |
34398604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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