View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5706-20 (Length: 218)

Name: Solexa-NF5706-20
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5706-20
Solexa-NF5706-20
[»] chr1 (16 HSPs)
chr1 (1-173)||(10824546-10824718)
chr1 (1-172)||(22683140-22683311)
chr1 (41-169)||(37189565-37189693)
chr1 (1-154)||(18844476-18844629)
chr1 (40-173)||(19056367-19056500)
chr1 (53-173)||(18844677-18844798)
chr1 (46-171)||(37189368-37189492)
chr1 (40-170)||(15825737-15825865)
chr1 (40-171)||(19056150-19056281)
chr1 (43-156)||(10824383-10824496)
chr1 (40-128)||(22683357-22683445)
chr1 (53-105)||(22683290-22683342)
chr1 (52-105)||(10824514-10824567)
chr1 (64-105)||(19056307-19056348)
chr1 (55-105)||(18844608-18844658)
chr1 (60-105)||(37189496-37189541)
[»] chr2 (21 HSPs)
chr2 (1-171)||(16973064-16973234)
chr2 (3-172)||(2916377-2916545)
chr2 (1-169)||(44594415-44594583)
chr2 (1-153)||(38982734-38982886)
chr2 (53-173)||(44594246-44594367)
chr2 (41-172)||(40987656-40987787)
chr2 (40-172)||(16973280-16973412)
chr2 (60-173)||(11533680-11533794)
chr2 (1-146)||(24125836-24125975)
chr2 (41-180)||(13559519-13559657)
chr2 (40-171)||(38982557-38982688)
chr2 (40-168)||(2916593-2916721)
chr2 (12-165)||(40987834-40987987)
chr2 (41-146)||(24126146-24126245)
chr2 (104-171)||(24125670-24125737)
chr2 (52-105)||(16973213-16973266)
chr2 (52-105)||(44594383-44594436)
chr2 (41-118)||(13559357-13559434)
chr2 (52-105)||(38982702-38982755)
chr2 (60-105)||(2916526-2916571)
chr2 (60-105)||(24125812-24125857)
[»] chr8 (17 HSPs)
chr8 (40-172)||(13884488-13884620)
chr8 (1-173)||(42126380-42126553)
chr8 (42-171)||(13884706-13884835)
chr8 (1-172)||(29714541-29714712)
chr8 (40-153)||(2554066-2554179)
chr8 (41-171)||(42126601-42126731)
chr8 (40-173)||(11867898-11868030)
chr8 (60-171)||(29714778-29714889)
chr8 (74-172)||(43416262-43416360)
chr8 (43-122)||(14996678-14996758)
chr8 (52-102)||(2554002-2554052)
chr8 (60-105)||(14996608-14996653)
chr8 (40-132)||(15862540-15862632)
chr8 (52-105)||(29714691-29714744)
chr8 (45-153)||(26745959-26746067)
chr8 (45-153)||(26745281-26745389)
chr8 (60-105)||(42126532-42126577)
[»] scaffold0060 (1 HSPs)
scaffold0060 (40-172)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (41-173)||(28715640-28715772)
chr7 (60-173)||(30862216-30862329)
chr7 (40-173)||(28715858-28715991)
chr7 (40-172)||(41985909-41986041)
chr7 (40-180)||(6474271-6474412)
chr7 (1-173)||(6474458-6474629)
chr7 (41-154)||(47373679-47373792)
chr7 (40-168)||(30862436-30862564)
chr7 (1-171)||(47373462-47373633)
chr7 (99-172)||(41986183-41986256)
chr7 (45-153)||(38408121-38408229)
chr7 (45-153)||(6271188-6271296)
chr7 (55-105)||(41986058-41986108)
chr7 (64-153)||(6270237-6270326)
chr7 (60-105)||(47373612-47373657)
chr7 (117-173)||(22226665-22226721)
chr7 (45-153)||(38407450-38407558)
[»] chr3 (14 HSPs)
chr3 (40-172)||(51663466-51663598)
chr3 (1-169)||(46003425-46003593)
chr3 (41-172)||(40244624-40244756)
chr3 (1-171)||(51663250-51663420)
chr3 (41-172)||(20537925-20538056)
chr3 (40-170)||(20538150-20538280)
chr3 (40-178)||(46003241-46003379)
chr3 (60-168)||(40364194-40364301)
chr3 (40-172)||(40364040-40364172)
chr3 (109-172)||(40244873-40244936)
chr3 (52-105)||(46003393-46003446)
chr3 (60-105)||(20538076-20538121)
chr3 (60-105)||(51663399-51663444)
chr3 (89-157)||(48867469-48867537)
[»] scaffold0781 (1 HSPs)
scaffold0781 (60-171)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (60-171)||(2216814-2216925)
chr6 (40-172)||(24798624-24798756)
chr6 (45-173)||(24798843-24798971)
chr6 (1-166)||(11643754-11643919)
chr6 (2-171)||(18494911-18495079)
chr6 (77-173)||(24690353-24690449)
chr6 (60-173)||(11643985-11644097)
chr6 (41-173)||(18494732-18494862)
chr6 (85-169)||(24690607-24690691)
chr6 (60-105)||(11643898-11643943)
chr6 (64-153)||(9954825-9954914)
chr6 (45-153)||(9955590-9955698)
chr6 (54-106)||(24798770-24798822)
chr6 (52-105)||(18494878-18494931)
chr6 (52-105)||(24690504-24690557)
[»] chr5 (5 HSPs)
chr5 (1-171)||(21249362-21249532)
chr5 (172-218)||(40684859-40684905)
chr5 (55-105)||(21249511-21249561)
chr5 (41-87)||(21249579-21249625)
chr5 (124-169)||(21249633-21249678)
[»] chr4 (13 HSPs)
chr4 (40-173)||(39161286-39161419)
chr4 (40-184)||(39161503-39161647)
chr4 (40-179)||(55173469-55173608)
chr4 (60-172)||(50509364-50509476)
chr4 (40-173)||(47097016-47097146)
chr4 (52-171)||(55173334-55173454)
chr4 (41-173)||(47096798-47096928)
chr4 (60-168)||(37996068-37996176)
chr4 (124-171)||(2623451-2623498)
chr4 (70-153)||(9738136-9738219)
chr4 (52-105)||(47096947-47097001)
chr4 (53-105)||(39161436-39161488)
chr4 (79-153)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (55-119)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (45-154)||(61042-61151)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 10824546 - 10824718
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||| ||||||| |||||||||||||        |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10824546 cataggggatcaaattggtacataagttaacgtttttttgagagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattg 10824645  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 173  Q
     ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10824646 atacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22683311 - 22683140
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||||||||||| |||||||||||||        ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  22683311 cataggggaccaaattggtacataagttaacgtttttttgagagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 22683212  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
     ||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  22683211 atacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 37189565 - 37189693
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||    
T  37189565 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaat 37189664  T
Q  141 taagttaagggaccggatgattgaataag 169  Q
    |||||||||||||| | ||||||||||||    
T  37189665 taagttaagggaccaggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 18844629 - 18844476
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||||||||| |||||| |||||||||| ||        ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18844629 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattg 18844530  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggacc 154  Q
     ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  18844529 atacaaattatagttaggggaccaaattgagataatcaattaagttaagggacc 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 19056367 - 19056500
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||  ||||||  ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||| ||||| | ||||| ||    
T  19056367 gagagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaa 19056466  T
Q  140 ttaagttaagggaccggatgattgaataagccta 173  Q
    ||||||||||||||||||||||||||||||||||    
T  19056467 ttaagttaagggaccggatgattgaataagccta 19056500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 18844677 - 18844798
Alignment:
Q  53 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 151  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  18844677 agaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 18844776  T
Q  152 accggatgattgaataagccta 173  Q
    | ||| ||||||||||||||||    
T  18844777 atcgggtgattgaataagccta 18844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 37189492 - 37189368
Alignment:
Q  46 aactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagt 145  Q
    ||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||    
T  37189492 aactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagt 37189393  T
Q  146 taagggaccggatgattgaataagcc 171  Q
    ||| ||||||| ||||||||||||||    
T  37189392 taa-ggaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 15825737 - 15825865
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    |||||||||||  | |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||    
T  15825737 gagagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagacaatcaa 15825834  T
Q  140 ttaagttaagggaccggatgattgaataagc 170  Q
    |||||||||| |||||| |||||||||||||    
T  15825835 ttaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 19056281 - 19056150
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | ||||| ||    
T  19056281 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaa 19056182  T
Q  140 ttaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||||||| | | ||||||||||||||    
T  19056181 ttaagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 10824496 - 10824383
Alignment:
Q  43 agaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatta 142  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||  | ||| |||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  143 agttaagggaccgg 156  Q
    |||||| |||||||    
T  10824396 agttaaaggaccgg 10824383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 22683357 - 22683445
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaatt 128  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| |||||    
T  22683357 gagagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 22683342 - 22683290
Alignment:
Q  53 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22683342 agaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 10824514 - 10824567
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||    
T  10824514 cagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 19056307 - 19056348
Alignment:
Q  64 aaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  19056307 aaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 18844658 - 18844608
Alignment:
Q  55 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||| ||||||||||| |||| || |||||||||||||| |||||||||||    
T  18844658 aaaggactaaaactaggaacggagtaaaacataggggactaaattggtaca 18844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 37189496 - 37189541
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  37189496 actaaaactaggaacggagcaaaacacaggggaccgaattggtaca 37189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 16973234 - 16973064
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||||||||||| |||||||||||||        ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16973234 cataggggaccaaattggtacataagttaacgtttttatgagagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattg 16973135  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    ||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  16973134 gtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 2916545 - 2916377
Alignment:
Q  3 taggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggt 102  Q
    ||||||||||||||| |||||||||||||        ||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  2916545 taggggaccaaattggtacataagttaac-gttttttgagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggt 2916447  T
Q  103 acaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||| || ||| |||||||||||||||    
T  2916446 acaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44594415 - 44594583
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||||||||| |||||| |||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||    
T  44594415 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattg 44594514  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 169  Q
     ||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||    
T  44594515 atacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 38982734 - 38982886
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||| |||||||||||| |||||||||||||        ||||||||||||||||||  |||||||||||||| ||||||||||||| || |||||||||    
T  38982734 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattg 38982833  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 153  Q
     ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  38982834 atacaaattatagttaagggaccaaattgagacaatcaattaagttaagggac 38982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 44594367 - 44594246
Alignment:
Q  53 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 151  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  44594367 agaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 44594268  T
Q  152 accggatgattgaataagccta 173  Q
    ||||| ||||||||||||||||    
T  44594267 accgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 40987787 - 40987656
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| || |||  ||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||||| || ||||||||||||| |||    
T  40987787 agagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaat 40987688  T
Q  141 taagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||||||||| |||||||||    
T  40987687 taagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 16973280 - 16973412
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||  ||||||  |||||||||||||| | |||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||| ||    
T  16973280 gagagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaa 16973379  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||   |||||||||||||||    
T  16973380 ttaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 11533680 - 11533794
Alignment:
Q  60 actaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggat 158  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| |||| |||    
T  11533680 actaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgat 11533779  T
Q  159 gattgaataagccta 173  Q
    |||||||||||||||    
T  11533780 gattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 24125836 - 24125975
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||      ||||||||||| ||||||||||||    
T  24125836 cataggggaccaaattgatacataagttaatgttttttttagagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattg 24125929  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagtt 146  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||    
T  24125930 gtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 13559519 - 13559657
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| || |||  |||||| ||||||||  |||||| || | |||||||| ||| |||||||||||||||||| || ||||||| ||||| |||    
T  13559519 agagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttgatacaaattatagttagggaaccaaattgaaacaatcaat 13559617  T
Q  141 taagttaagggaccggatgattgaataagcctacttttta 180  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13559618 taagttaagggaccggatgattgaataagcctatttttta 13559657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 38982688 - 38982557
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||| |||||  |||||| ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||  | ||||||||||||| ||    
T  38982688 gagagtaactaatagaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaa 38982589  T
Q  140 ttaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||| ||| ||| ||||||| ||||||    
T  38982588 ttaagttaaaggatcgggtgattgattaagcc 38982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 2916593 - 2916721
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||| || ||||||||||||  ||||||| |||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||| ||    
T  2916593 gagagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaa 2916692  T
Q  140 ttaagttaagggaccggatgattgaataa 168  Q
    ||||||||||| |   |||||||||||||    
T  2916693 ttaagttaaggaattagatgattgaataa 2916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 40987834 - 40987987
Alignment:
Q  12 aaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattat 111  Q
    ||||||||||||||||||||        ||||||||||| ||||||  ||||||| ||| ||   ||||||| |||||||||||||||  ||||||||||    
T  40987834 aaattgatacataagttaacggttttttgagagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattat 40987933  T
Q  112 agttaggggactaaattgagacaattaattaagttaagggaccggatgattgaa 165  Q
    |||||| |||  |||||||||||||||||||||||||| |||||| ||||||||    
T  40987934 agttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 24126146 - 24126245
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| || |||| |||||||||||      ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||    
T  24126146 agagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaat 24126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  104 caaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 16973266 - 16973213
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  16973266 cagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 44594383 - 44594436
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||    
T  44594383 cagaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 13559434 - 13559357
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagg 118  Q
    |||||||||| ||||||  |||||||||| |||| || ||||| ||| | ||||||||||  ||||||||||||||||    
T  13559434 agagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagttagg 13559357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 38982702 - 38982755
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| |||||||| || |||| ||||||||||| |||||||||||||||||    
T  38982702 cagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 2916571 - 2916526
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||    
T  2916571 actaaaactaataacggagcaaaatgtaggggaccaaattggtaca 2916526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 24125812 - 24125857
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||| ||||  |||||||||||||||||||||||| ||||    
T  24125812 actaaaactaataacagagcaaaacataggggaccaaattgataca 24125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 13884620 - 13884488
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13884620 gagagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaa 13884521  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    ||||||||||||||||| |||||||||||||||    
T  13884520 ttaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 42126553 - 42126380
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnng-agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaatt 99  Q
    |||||||||||||||||||||||||||||||        | |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  42126553 cataggggaccaaattgatacataagttaacgtttttttgtagagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaatt 42126454  T
Q  100 ggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 173  Q
    | |||||||||||||||| | |  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42126453 gatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagccta 42126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 13884706 - 13884835
Alignment:
Q  42 gagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatt 141  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13884706 gagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaatt 13884805  T
Q  142 aagttaagggaccggatgattgaataagcc 171  Q
    ||||||||||||||| ||||||||||||||    
T  13884806 aagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 29714712 - 29714541
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||||| |||||||||| |||||||||||||        ||||||||||| ||||||  | |||| |||||||| |||||||| ||||||||||||||||    
T  29714712 cataggagaccaaattggtacataagttaacgtttttacgagagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattg 29714613  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
    ||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  29714612 gtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 2554066 - 2554179
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||| ||    
T  2554066 gagagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaa 2554165  T
Q  140 ttaagttaagggac 153  Q
    ||||||||||||||    
T  2554166 ttaagttaagggac 2554179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 42126601 - 42126731
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| ||||||  ||||||| |||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||| ||| |||    
T  42126601 agagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagataatcaat 42126700  T
Q  141 taagttaagggaccggatgattgaataagcc 171  Q
    |||||||||||||||| ||||||||||||||    
T  42126701 taagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 11867898 - 11868030
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| || |||| |||||||||||| || || |||||||||| ||||||||||| ||||||||||||||| || || ||||||||||||| ||    
T  11867898 gagagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaa 11867997  T
Q  140 ttaagttaagggaccggatgattgaataagccta 173  Q
    ||||||||| ||||| | ||||||||||||||||    
T  11867998 ttaagttaa-ggaccaggtgattgaataagccta 11868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 29714778 - 29714889
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| | ||||| ||||||||||||||||| | ||    
T  29714778 actaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtg 29714877  T
Q  160 attgaataagcc 171  Q
    ||  ||||||||    
T  29714878 atcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 43416360 - 43416262
Alignment:
Q  74 cgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
    |||| ||||||||||| ||  |||||| |||||||||||||||||||| |||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  43416360 cgaaacaaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 14996678 - 14996758
Alignment:
Q  43 agaaactaccagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtacaaattatagttaggggac 122  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  14996678 agaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggac 14996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 2554052 - 2554002
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggt 102  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2554052 cagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 14996653 - 14996608
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  14996653 actaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 15862540 - 15862632
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgaga 132  Q
    |||||||||||   ||||| | |||||| ||||||| |||||| ||||| ||||||||||  ||||||||||||||||||||  |||||||||    
T  15862540 gagagaaactaatggaaagtattaaaaccagtaacggagcaaatcatagaggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 29714744 - 29714691
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||||    
T  29714744 cagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 26745959 - 26746067
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  ||||| |||| | |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  || ||||    
T  26745959 aaactaacagaaaggaccgaaactggtaatggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaaataag 26746058  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  26746059 ttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 26745389 - 26745281
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || ||   ||||  |||||||    
T  26745389 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttagtacaaacaattaag 26745290  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  26745289 ttaagggac 26745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 42126577 - 42126532
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  42126577 actaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 22921 - 23053
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  22921 gagagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaa 23020  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    ||||||||||||||||| |||||||||||||||    
T  23021 ttaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 28715772 - 28715640
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||||| | |||||||||    
T  28715772 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaat 28715673  T
Q  141 taagttaagggaccggatgattgaataagccta 173  Q
    |||||||||||||||| ||||||||||| ||||    
T  28715672 taagttaagggaccgggtgattgaataaaccta 28715640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 30862329 - 30862216
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||    
T  30862329 actaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatg 30862230  T
Q  160 attgaataagccta 173  Q
    ||||||||||||||    
T  30862229 attgaataagccta 30862216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 28715858 - 28715991
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  |||||||||||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  28715858 gagagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaa 28715957  T
Q  140 ttaagttaagggaccggatgattgaataagccta 173  Q
    ||||||||||||||||| | ||||||||||||||    
T  28715958 ttaagttaagggaccgggtaattgaataagccta 28715991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 41986041 - 41985909
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| | ||||| ||||||| ||||||| |||||||||||| ||||||||||||  |||||||||||||||||||  ||||||||||||| ||    
T  41986041 gagagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaa 41985942  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||| || |||||||||||||||    
T  41985941 ttaagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 6474412 - 6474271
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaa-cataggggaccaaattggtacaaattatagttaggggactaaattgagacaatta 138  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||  ||||||||||||| |    
T  6474412 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgagacaatca 6474313  T
Q  139 attaagttaagggaccggatgattgaataagcctacttttta 180  Q
    |||||||||||||| | | | ||||||||||| || ||||||    
T  6474312 attaagttaagggatccggtaattgaataagcataattttta 6474271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6474458 - 6474629
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||| |||||||||||| |||||||||||||        ||||||||||| || |||| |||||||||||||||  |||||| |||| |||| ||||| |    
T  6474458 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcg 6474557  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 173  Q
    |||||| ||||||||||| ||| ||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  6474558 gtacaa-ttatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagccta 6474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 47373679 - 47373792
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| || |||| | |||||||||||||  | ||||||||| | ||| |||||||||||||||||| ||||||||| ||||||||||||| |||    
T  47373679 agagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaat 47373778  T
Q  141 taagttaagggacc 154  Q
    ||||||||||||||    
T  47373779 taagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 30862436 - 30862564
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  ||||||| |||||||  ||||||||||| |||||||||||| |||||||||||||||||| || ||||||| ||||| ||    
T  30862436 gagagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaa 30862535  T
Q  140 ttaagttaagggaccggatgattgaataa 168  Q
    || | ||||||||||   |||||||||||    
T  30862536 ttcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 47373633 - 47373462
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||||||||| |||||| |||||||||||||        ||||||||||| || |||  ||||||||||| |||  ||||||||||||||||||||||||    
T  47373633 cataggggactaaattggtacataagttaac-gttttttgagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattg 47373535  T
Q  101 gtacaaat--tatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||  |||| |||| |||  ||||||||||||| |||||||||||| || ||  ||||||||||||||    
T  47373534 gtacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataagcc 47373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  99 tggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 38408121 - 38408229
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  38408121 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 38408220  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  38408221 ttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 6271188 - 6271296
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  |||||||||||| |||||||| ||  |||| || ||||||||||||||| ||||||||| || |||  | ||  |||||||    
T  6271188 aaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggggaccaatttggtagaaacaattaag 6271287  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  6271288 ttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  55 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 6270326 - 6270237
Alignment:
Q  64 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 153  Q
    |||||||||||| ||||| || ||| |||| || ||||||||||||||| ||||| ||| || ||   |||| |||||||||||||||||    
T  6270326 aaactagtaacggagcaacacttagaggacgaatttggtacaaattatatttaggcgaccaatttagtacaaataattaagttaagggac 6270237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 47373657 - 47373612
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  47373657 actaaaactaataacggagcaaaacataggggactaaattggtaca 47373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 22226665 - 22226721
Alignment:
Q  117 ggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 173  Q
    |||||| ||||||||||||| ||||||| ||||||| | | ||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagccta 22226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 38407558 - 38407450
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||   ||||||    
T  38407558 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaaccattaag 38407459  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  38407458 ttaagggac 38407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 51663466 - 51663598
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  51663466 gagagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaa 51663565  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||||||||||||||||||||    
T  51663566 ttaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46003425 - 46003593
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||| ||||||||||| |||||||||||||         |||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||    
T  46003425 catagaggaccaaattggtacataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattg 46003524  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 169  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  46003525 gtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggaccagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 40244756 - 40244624
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacatagggga-ccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  40244756 agagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaa 40244657  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    ||||||||||||| |||||||||||||||||||    
T  40244656 ttaagttaagggatcggatgattgaataagcct 40244624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 51663420 - 51663250
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||||||||||  |||||||||||||        ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  51663420 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattg 51663321  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
     |||||||||||||||| |||| | ||| | ||||| |||||||||||| |||||| ||||| ||||||||    
T  51663320 atacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagcc 51663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 20538056 - 20537925
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |  || |||    
T  20538056 agagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaat 20537957  T
Q  141 taagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||| ||||||| |||| ||||    
T  20537956 taagttaagggaccagatgattcaataggcct 20537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 20538150 - 20538280
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  |||||||||||||||| ||||||||||||   || |||||| ||||||||||||||||||||  ||||||||||||| ||    
T  20538150 gagagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagacaatcaa 20538249  T
Q  140 ttaagttaagggaccggatgattgaataagc 170  Q
    |||| |||| ||||||| |||||||||||||    
T  20538250 ttaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 46003379 - 46003241
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| || |||| ||||||||| |||||  | || ||||||| ||||||||||| ||||||||||||||||||||| ||||| | ||||| ||    
T  46003379 gagagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaa 46003280  T
Q  140 ttaagttaagggaccggatgattgaataagcctactttt 178  Q
    ||||||||| ||||||| ||||||||||| |||||||||    
T  46003279 ttaagttaaaggaccgggtgattgaataaacctactttt 46003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 40364194 - 40364301
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    |||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||   ||    
T  40364194 actaaaactagtaacggaacaaaacataggg-atcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtg 40364292  T
Q  160 attgaataa 168  Q
    |||||||||    
T  40364293 attgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 40364172 - 40364040
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| || |||  |||||||||| ||||| ||||||| | |||||| ||||||| ||||||||||| ||| ||||| ||||| ||| ||| ||    
T  40364172 gagagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagataatcaa 40364073  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||  || |||| ||||||||||    
T  40364072 ttaagttaagggattgggtgatcgaataagcct 40364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  109 tatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 46003393 - 46003446
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  46003393 cagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 20538121 - 20538076
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  20538121 actaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 51663444 - 51663399
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||    
T  51663444 actaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 48867469 - 48867537
Alignment:
Q  89 gggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccgga 157  Q
    ||||||||||||  |||  | ||||||| ||||| ||||||||| ||| || |||||||||||||||||    
T  48867469 gggaccaaattgacacacttaatagttaagggaccaaattgagaaaataaaataagttaagggaccgga 48867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 5271 - 5382
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5271 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 5370  T
Q  160 attgaataagcc 171  Q
    ||||||||||||    
T  5371 attgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 2216814 - 2216925
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2216814 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 2216913  T
Q  160 attgaataagcc 171  Q
    ||||||||||||    
T  2216914 attgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 24798756 - 24798624
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||  ||    
T  24798756 gagagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaa 24798657  T
Q  140 ttaagttaagggaccggatgattgaataagcct 172  Q
    |||||||||||||||| || |||||||||||||    
T  24798656 ttaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 24798843 - 24798971
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||| ||||||     
T  24798843 aaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaat 24798942  T
Q  145 ttaagggaccggatgattgaataagccta 173  Q
    |||||||| ||| ||||||||||||||||    
T  24798943 ttaagggatcgggtgattgaataagccta 24798971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 11643919 - 11643754
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    ||||||||||||||||| |||||||||||||         |||||||||| |||| || ||||||||||||||| || |||||||||||| |||||||||    
T  11643919 cataggggaccaaattggtacataagttaacgttttttttagagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattg 11643820  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaat 166  Q
     ||||||||||||||||||||  ||||||||||||| |||||| |||||||||||| |||||||||    
T  11643819 atacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 18494911 - 18495079
Alignment:
Q  2 ataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattgg 101  Q
    |||||||||||||||| |||||||||||||         |||||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||||||     
T  18494911 ataggggaccaaattgctacataagttaacgttttttt-agagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattga 18495009  T
Q  102 tacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||||||||| ||||  ||||| | | ||| ||||||||||||||||  ||||||||||||||||    
T  18495010 tacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 24690449 - 24690353
Alignment:
Q  77 agcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 173  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  24690449 agcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 11643985 - 11644097
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggg-actaaattgagacaattaattaagttaagggaccggat 158  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |    
T  11643985 actaaaactagtaacaaag-aaaacataggg-accaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggt 11644082  T
Q  159 gattgaataagccta 173  Q
    |||||||||||||||    
T  11644083 gattgaataagccta 11644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 18494862 - 18494732
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||||| || |||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||| |||    
T  18494862 agagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaat 18494765  T
Q  141 taagttaagggaccggatgattgaataagccta 173  Q
     |||||||||||||   ||||||||||||||||    
T  18494764 aaagttaagggaccatgtgattgaataagccta 18494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 24690607 - 24690691
Alignment:
Q  85 ataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 169  Q
    ||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||||||| ||| ||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 11643943 - 11643898
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  11643943 actaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 9954914 - 9954825
Alignment:
Q  64 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 153  Q
    ||||| |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9954914 aaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 9955590 - 9955698
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||  || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  9955590 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggatgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 9955689  T
Q  145 ttaagggac 153  Q
    |||||||||    
T  9955690 ttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 24798770 - 24798822
Alignment:
Q  54 gaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaa 106  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  24798770 gaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 18494878 - 18494931
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||||||||||||||||||   ||| ||| |||||||||||||||| ||||    
T  18494878 cagaaagaactaaaactagtaatagagcgaaatataggggaccaaattgctaca 18494931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 24690504 - 24690557
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    ||||||| |||||||||| |||   ||||||||||||| |||||||||||||||    
T  24690504 cagaaaggactaaaactattaatagagcaaaacataggagaccaaattggtaca 24690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 21249532 - 21249362
Alignment:
Q  1 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 100  Q
    |||| |||||||||||| ||||||||||||||       ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  21249532 cataagggaccaaattggtacataagttaacatttttttgagagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattg 21249433  T
Q  101 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||| | ||||||||| | ||||||||||||||    
T  21249432 gtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 40684905 - 40684859
Alignment:
Q  172 tactttttataataaaaaatcacttttatacttcctcatggtaattt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40684905 tactttttataataaaaaatcacttttatacttcctcatggtaattt 40684859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  55 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||| |||||||||||||||  ||||||||||| |||||||||||||||||    
T  21249561 aaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 21249579 - 21249625
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacata 87  Q
    |||||||||| ||||||| |||||||||| ||||| |||||||||||    
T  21249579 agagaaactaacagaaaggactaaaactaataacggagcaaaacata 21249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 21249633 - 21249678
Alignment:
Q  124 aaattgagacaattaattaagttaagggaccggatgattgaataag 169  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  21249633 aaattaagacaatcaattaagttaagggacaagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 39161419 - 39161286
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||    
T  39161419 gagagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaa 39161320  T
Q  140 ttaagttaagggaccggatgattgaataagccta 173  Q
    ||||||||| ||| ||| ||||||||||||||||    
T  39161319 ttaagttaaaggatcgggtgattgaataagccta 39161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 39161503 - 39161647
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||| | ||||| ||    
T  39161503 gagagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaa 39161602  T
Q  140 ttaagttaagggaccggatgattgaataagcctactttttataat 184  Q
    ||||||||||| |||||||| |||||||||||||  |||||||||    
T  39161603 ttaagttaaggaaccggatggttgaataagcctagattttataat 39161647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 55173469 - 55173608
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| || |||  |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||    
T  55173469 gagagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaa 55173568  T
Q  140 ttaagttaagggaccggatgattgaataagcctacttttt 179  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  55173569 ttaagttaagggaccgggtgattgaataagcctaattttt 55173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 50509364 - 50509476
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||||    
T  50509364 actaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatg 50509463  T
Q  160 attgaataagcct 172  Q
    |||||||||||||    
T  50509464 attgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 47097016 - 47097146
Alignment:
Q  40 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 139  Q
    ||||||||||| || |||  ||||||||||||||||  |||||||||||   | |||||||||||||||||||||||| |||||||||||||||||| ||    
T  47097016 gagagaaactaacaaaaatgactaaaactagtaacggggcaaaacatag---atcaaattggtacaaattatagttagaggactaaattgagacaatcaa 47097112  T
Q  140 ttaagttaagggaccggatgattgaataagccta 173  Q
    |||||||||| || ||||||||||||||||||||    
T  47097113 ttaagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 55173454 - 55173334
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagg 150  Q
    ||||||| |||||||||||||||| ||||||| ||||||| ||||||||  ||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  55173454 cagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T
Q  151 gaccggatgattgaataagcc 171  Q
     |||||||||| |||||||||    
T  55173354 aaccggatgatcgaataagcc 55173334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 47096928 - 47096798
Alignment:
Q  41 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 140  Q
    |||||||| | || |||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||| ||| |||    
T  47096928 agagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtacaaattat-gttaggggaccaaattgagataatcaat 47096831  T
Q  141 taagttaagggaccggatgattgaataagccta 173  Q
    |||||||||||| | | ||||||||||||||||    
T  47096830 taagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 37996176 - 37996068
Alignment:
Q  60 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 159  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| | || | |||||||| | | ||    
T  37996176 actaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtg 37996077  T
Q  160 attgaataa 168  Q
    |||||||||    
T  37996076 attgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 2623451 - 2623498
Alignment:
Q  124 aaattgagacaattaattaagttaagggaccggatgattgaataagcc 171  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  2623451 aaattgagacaatcaattaagttaagggaccgagtgattgaataagcc 2623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 9738219 - 9738136
Alignment:
Q  70 gtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 153  Q
    |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9738219 gtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 47097001 - 47096947
Alignment:
Q  52 cagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtaca 105  Q
    ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  47097001 cagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 39161488 - 39161436
Alignment:
Q  53 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 105  Q
    |||||| ||||||||||| |||| | ||||||||| |||||||||||||||||    
T  39161488 agaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 9738937 - 9739011
Alignment:
Q  79 caaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 153  Q
    |||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  ||| ||||||||||||    
T  9738937 caaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaagggac 9739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 108111 - 108047
Alignment:
Q  55 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg 119  Q
    |||| |||||||||||||| | ||||||||| || ||||||||||| |||||||||| |||||||    
T  108111 aaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattatggttaggg 108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 61042 - 61151
Alignment:
Q  45 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 144  Q
    |||||| ||||||| ||  |||||  ||||| |||||||| ||| |||| || ||||||||||||| | ||| ||||| || |||  ||||  |||||||    
T  61042 aaactaacagaaaggacctaaactgataacggagcaaaacttagaggacgaatttggtacaaattaaatttaagggaccaatttggtacaaacaattaag 61141  T
Q  145 ttaagggacc 154  Q
    ||||||||||    
T  61142 ttaagggacc 61151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University