View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-23 (Length: 143)
Name: Solexa-NF5706-23
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-58
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 5688818 - 5688683
Alignment:
| Q |
8 |
atgagaatatgtgtagagctctcaaaatgggytatctaaccttaaacagatcggccttaacaacctttatcgcgttaggccaaaaagttctttcaagtat |
107 |
Q |
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| T |
5688818 |
atgagattatgtgtagagctctcaaaatgggttatctaaccttaaagagatcggccctaacaacctttatcgctttaggccaaaaagttctttcaagtac |
5688719 |
T |
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| Q |
108 |
gagctataaaaatactatatgaagtcggccctatgt |
143 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5688718 |
gagctataaaaatactatatgaagtcggccctatgt |
5688683 |
T |
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