View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-25 (Length: 266)
Name: Solexa-NF5706-25
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-25 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 26641848 - 26641592
Alignment:
| Q |
8 |
acatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgtcaagaacgtgacaacagcggatgacga |
107 |
Q |
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| T |
26641848 |
acatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgtcaagaacgtgacaacagcagatgacga |
26641749 |
T |
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| Q |
108 |
tgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttgacactgcgacttttagcttttgacttcaaacttgatttctt |
207 |
Q |
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| T |
26641748 |
tgctgaatatgttgttgttgattagaattaattttaccttcaaaattgatattaacttgacactgcgacttttagcttttgacttcaaacttgatttctt |
26641649 |
T |
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| Q |
208 |
ttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
264 |
Q |
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| T |
26641648 |
ttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
26641592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 26656621 - 26656470
Alignment:
| Q |
16 |
caaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgtcaagaacgtgacaacagcggatgacgatgctgaat |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| || | || | ||||||| |||||| |||||||||||||| |||||||| | |||||| |
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| T |
26656621 |
caaatcaaagaattgctgttggaattcaagaagaaaacacctcccacagacgatgaaaattttgtcaggaacgtgacaacaggggatgacggtcctgaat |
26656522 |
T |
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| Q |
116 |
atgttgttgttgattagaattaattttgccttcaaaattgatattaacttga |
167 |
Q |
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| T |
26656521 |
ttgttgttgtcaattcgaattgattttgcatttaaaattgattttaagttga |
26656470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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