View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-26 (Length: 254)
Name: Solexa-NF5706-26
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-26 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 470403 - 470161
Alignment:
| Q |
6 |
caccaaggacaggcacacaaaagttgatggccgtggccggagaattcgaatgccggcgacatgtgcagcaagagttttccagttgaccagagaattaggc |
105 |
Q |
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| T |
470403 |
caccaaggacaggcacacaaaagttgatggtcgtggacggagaattcgaatgccggcgacatgtgcagcaagagttttccagttgaccagagaattaggc |
470304 |
T |
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| Q |
106 |
cacaaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaacaatcccagccaatttctcaa |
205 |
Q |
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| T |
470303 |
cacaaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaacaatcccagccaatttctcaa |
470204 |
T |
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| Q |
206 |
cgctcaatgtctcactccgtagcagcggctctacactctctgc |
248 |
Q |
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| T |
470203 |
cgctcaatgtctcactccgtagcagcggctctacactctctgc |
470161 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 28042170 - 28042237
Alignment:
| Q |
118 |
ggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaac |
185 |
Q |
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| T |
28042170 |
ggtgaaacaatcgagtggcttcttcgtcatgctgagccgtcgatcatcgccgctacaggtaccggaac |
28042237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 14250406 - 14250330
Alignment:
| Q |
109 |
aaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaac |
185 |
Q |
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| T |
14250406 |
aaatccgacggtcaaactattgaatggcttctccgtcaagctgaaccgtcgatcatcgccgccaccggtaccggaac |
14250330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 44960651 - 44960602
Alignment:
| Q |
103 |
ggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctga |
152 |
Q |
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| T |
44960651 |
ggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctga |
44960602 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 9484926 - 9484840
Alignment:
| Q |
66 |
atgtgcagcaagagttttccagttgaccagagaattaggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctga |
152 |
Q |
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| T |
9484926 |
atgtgcagcaagaatctttcagctaacaagagagttaggtcataaatcagatggtgaaacaattcaatggcttttacaacaatctga |
9484840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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