View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-27 (Length: 169)
Name: Solexa-NF5706-27
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4863370 - 4863539
Alignment:
| Q |
1 |
caaaggctagagggatcccttacacaaagaaaaagaagaagaggagtcaacttaagggcactcataatactacttctaagtctttcaaccaattagcttc |
100 |
Q |
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| T |
4863370 |
caaaggctagagggatcccttacacaaagaaaaagaagaagaggagtcaacttaagggcactcataatactacttctaagtctttcaaccaattagcttc |
4863469 |
T |
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| Q |
101 |
ttgagattcatggt-aannnnnnnnatcaaattaattaatatttgtatgccttaattagtttgaatttaa |
169 |
Q |
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| T |
4863470 |
ttgagattcatggtaaattttttttatcaaattaattaatatttgtatgccttaattagtttgaatttaa |
4863539 |
T |
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