View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5706-28 (Length: 196)

Name: Solexa-NF5706-28
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5706-28
Solexa-NF5706-28
[»] chr8 (8 HSPs)
chr8 (8-109)||(26875128-26875229)
chr8 (8-109)||(26872670-26872771)
chr8 (8-63)||(4838726-4838781)
chr8 (8-63)||(23091540-23091595)
chr8 (8-41)||(36577979-36578012)
chr8 (9-41)||(4836509-4836541)
chr8 (9-41)||(4841954-4841986)
chr8 (8-41)||(2750249-2750282)
[»] chr4 (9 HSPs)
chr4 (8-109)||(12997467-12997568)
chr4 (5-41)||(638073-638109)
chr4 (10-89)||(24923243-24923322)
chr4 (8-41)||(4749055-4749088)
chr4 (8-89)||(17141824-17141905)
chr4 (8-41)||(32215929-32215962)
chr4 (8-63)||(52296716-52296771)
chr4 (8-40)||(772287-772319)
chr4 (8-40)||(20866851-20866883)
[»] scaffold1896 (1 HSPs)
scaffold1896 (8-109)||(373-474)
[»] chr2 (16 HSPs)
chr2 (8-109)||(20622390-20622491)
chr2 (8-42)||(21851548-21851582)
chr2 (8-42)||(21859983-21860017)
chr2 (8-42)||(25262592-25262626)
chr2 (8-42)||(33308195-33308229)
chr2 (8-41)||(22186090-22186123)
chr2 (8-65)||(34543056-34543113)
chr2 (11-42)||(17686391-17686422)
chr2 (8-39)||(21322013-21322044)
chr2 (10-41)||(25193118-25193149)
chr2 (10-89)||(28479888-28479967)
chr2 (8-63)||(39756276-39756331)
chr2 (16-89)||(21149978-21150051)
chr2 (8-41)||(27425298-27425331)
chr2 (8-41)||(27440344-27440377)
chr2 (6-42)||(27605546-27605582)
[»] chr5 (8 HSPs)
chr5 (8-109)||(31422654-31422755)
chr5 (8-89)||(29189206-29189287)
chr5 (8-51)||(31411804-31411847)
chr5 (8-42)||(31549543-31549577)
chr5 (10-41)||(2826874-2826905)
chr5 (19-89)||(24693939-24694009)
chr5 (8-42)||(29185276-29185310)
chr5 (8-41)||(23568473-23568506)
[»] chr3 (7 HSPs)
chr3 (8-89)||(2216571-2216652)
chr3 (8-89)||(16289505-16289586)
chr3 (8-89)||(4444307-4444388)
chr3 (8-42)||(1005757-1005791)
chr3 (8-89)||(11262297-11262379)
chr3 (8-42)||(13603392-13603426)
chr3 (8-41)||(52987458-52987491)
[»] chr6 (15 HSPs)
chr6 (6-57)||(5995676-5995727)
chr6 (8-89)||(3042353-3042434)
chr6 (8-89)||(20215977-20216058)
chr6 (8-89)||(22109998-22110079)
chr6 (6-40)||(5488174-5488208)
chr6 (8-42)||(27048685-27048719)
chr6 (8-42)||(27058929-27058963)
chr6 (8-42)||(30996959-30996993)
chr6 (8-89)||(16587761-16587842)
chr6 (8-89)||(16607538-16607619)
chr6 (8-89)||(24919129-24919210)
chr6 (8-42)||(15390691-15390725)
chr6 (11-89)||(17092481-17092559)
chr6 (8-60)||(24296439-24296491)
chr6 (8-60)||(24310470-24310522)
[»] scaffold0206 (1 HSPs)
scaffold0206 (8-89)||(19468-19549)
[»] scaffold0609 (1 HSPs)
scaffold0609 (8-89)||(2513-2594)
[»] scaffold1120 (1 HSPs)
scaffold1120 (8-42)||(395-429)
[»] chr7 (13 HSPs)
chr7 (8-42)||(559893-559927)
chr7 (8-42)||(569802-569836)
chr7 (8-42)||(5200609-5200643)
chr7 (8-42)||(5209738-5209772)
chr7 (8-42)||(17515800-17515834)
chr7 (8-42)||(17537380-17537414)
chr7 (8-42)||(27967396-27967430)
chr7 (8-42)||(27976849-27976883)
chr7 (8-42)||(38411785-38411819)
chr7 (8-41)||(15974744-15974777)
chr7 (8-63)||(4185162-4185217)
chr7 (19-89)||(13737317-13737387)
chr7 (8-42)||(16474427-16474461)
[»] chr1 (4 HSPs)
chr1 (8-42)||(18750205-18750239)
chr1 (8-41)||(13463836-13463869)
chr1 (8-63)||(18597075-18597130)
chr1 (11-41)||(179835-179865)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-42)||(24495-24529)
[»] scaffold0669 (1 HSPs)
scaffold0669 (8-41)||(6041-6074)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26875128 - 26875229
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26875128 cggtggccggtggtggcaccaccgcgccggagttcaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcgtgctggtttcaattc 26875227  T
Q  108 tt 109  Q
    ||    
T  26875228 tt 26875229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26872670 - 26872771
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26872670 cggtggccggtggtggcaccaccgcgccggagttcaaacttactccgattaaaaaatttcttgtagttttaaacatccttttgcgtgctggtttcaattc 26872769  T
Q  108 tt 109  Q
    ||    
T  26872770 tt 26872771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 4838726 - 4838781
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    |||||||||||||||||||||||||||||||||| |||  | | ||||||||||||    
T  4838726 cggtggccggtggtggcaccaccgcgccggagttcaaaactccgccgattcaaaaa 4838781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 23091595 - 23091540
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    ||||||||||||||||||||||||||||||||||| ||  | ||||||||| ||||    
T  23091595 cggtggccggtggtggcaccaccgcgccggagttttaaactcctccgattccaaaa 23091540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 36577979 - 36578012
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  36577979 cggtggccggtggtggcaccaccgcgccggagtt 36578012  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 4836541 - 4836509
Alignment:
Q  9 ggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||||||||||||||||||    
T  4836541 ggtggccggtggtggcaccaccgcgccggagtt 4836509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 4841986 - 4841954
Alignment:
Q  9 ggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||||||||||||||||||    
T  4841986 ggtggccggtggtggcaccaccgcgccggagtt 4841954  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 2750249 - 2750282
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||| |||||||||||||||||    
T  2750249 cggtggccggtggtggaaccaccgcgccggagtt 2750282  T

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Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 12997568 - 12997467
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12997568 cggtggccggtggtggcaccaccgcgccggagttcaaacttactccgattcaaaaatttcttgtagttttgaacatccttttgcatgctggtttcaattc 12997469  T
Q  108 tt 109  Q
    ||    
T  12997468 tt 12997467  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 638073 - 638109
Alignment:
Q  5 acacggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||||||||||||||||||||||    
T  638073 acacggtggccggtggtggcaccaccgcgccggagtt 638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 24923322 - 24923243
Alignment:
Q  10 gtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||  ||||||||||||||||| ||  | |||||||||||||| || ||  | ||||||||||||||||    
T  24923322 gtggccggtggtggtgccaccgcgccggagttttaaactcctccgattcaaaaactttttacatttttaaacatcctttt 24923243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 4749055 - 4749088
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  4749055 cggtggccggtggtggcaccaccgcgccggagtt 4749088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 17141905 - 17141824
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||| |||||||||||| ||||||||||||||||| ||  | |||||||||||||| || ||    ||||||||||||||||    
T  17141905 cggtagccggtggtggcgccaccgcgccggagttttaaaatcctccgattcaaaaactttttacgtttttaaacatcctttt 17141824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 32215962 - 32215929
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  32215962 cggtggccggtggtggcaccaccgcgccggagtt 32215929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 52296771 - 52296716
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    |||||||||||||||||||||| ||||||||||| |||  | | ||||||||||||    
T  52296771 cggtggccggtggtggcaccactgcgccggagttcaaaactccgccgattcaaaaa 52296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 772319 - 772287
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagt 40  Q
    |||||||||||||||||||| ||||||||||||    
T  772319 cggtggccggtggtggcacctccgcgccggagt 772287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 20866851 - 20866883
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagt 40  Q
    |||||||||||||||||||||||||||| ||||    
T  20866851 cggtggccggtggtggcaccaccgcgccagagt 20866883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1896 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1896
Description:

Target: scaffold1896; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 474 - 373
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  474 cggtggccggtagtggcaccaccgcgccggagttcaaacttgctccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 375  T
Q  108 tt 109  Q
    ||    
T  374 tt 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20622491 - 20622390
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  20622491 cggtggccggtggtggcaccaccgcgccggagttcaaacttactccgattcaaaaatttcttgtagttctaaacatccttatgcatgctggtttcaattc 20622392  T
Q  108 tt 109  Q
    ||    
T  20622391 tt 20622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 21851548 - 21851582
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  21851548 cggtggccggtggtggcaccaccgcgccggagttt 21851582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 21859983 - 21860017
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  21859983 cggtggccggtggtggcaccaccgcgccggagttt 21860017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 25262626 - 25262592
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  25262626 cggtggccggtggtggcaccaccgcgccggagttt 25262592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 33308195 - 33308229
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  33308195 cggtggccggtggtggcaccaccgcgccggagttt 33308229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 22186123 - 22186090
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  22186123 cggtggccggtggtggcaccaccgcgccggagtt 22186090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 34543056 - 34543113
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatt 65  Q
    ||||||||||||||||||||||||||||||||| | ||  | | ||||||||||||||    
T  34543056 cggtggccggtggtggcaccaccgcgccggagtgtgaaactccgccgattcaaaaatt 34543113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 17686391 - 17686422
Alignment:
Q  11 tggccggtggtggcaccaccgcgccggagttt 42  Q
    ||||||||||||||||||||||||||||||||    
T  17686391 tggccggtggtggcaccaccgcgccggagttt 17686422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 21322013 - 21322044
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggag 39  Q
    ||||||||||||||||||||||||||||||||    
T  21322013 cggtggccggtggtggcaccaccgcgccggag 21322044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 25193118 - 25193149
Alignment:
Q  10 gtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||    
T  25193118 gtggccggtggtggcaccaccgcgccggagtt 25193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 28479967 - 28479888
Alignment:
Q  10 gtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||| ||||||||||||||||| ||  |  ||| ||||||||| || ||  | ||||||||||||||||    
T  28479967 gtggccggtggtggcgccaccgcgccggagttttaaactcgtccaattcaaaaactttttacatttttaaacatcctttt 28479888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 39756331 - 39756276
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    |||||||||| |||||||||||||||||||||||  ||  | ||||||||||||||    
T  39756331 cggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaa 39756276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 21150051 - 21149978
Alignment:
Q  16 ggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||| ||||||||||||||||| ||  | |||||||||||||  || ||  | ||||||||||||||||    
T  21150051 ggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaagctttttacatttttaaacatcctttt 21149978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 27425298 - 27425331
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||| |||||||||||||||||||||||    
T  27425298 cggtggccggcggtggcaccaccgcgccggagtt 27425331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 27440344 - 27440377
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||| |||||||||||||||||||||||    
T  27440344 cggtggccggcggtggcaccaccgcgccggagtt 27440377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 27605546 - 27605582
Alignment:
Q  6 cacggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  27605546 cacggtggccggaggtggcaccaccgcgtcggagttt 27605582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 1e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 31422755 - 31422654
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatccttttgcatgctggtttcaattc 107  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  31422755 cggtggccggtggtggcaccactgcgccggagttcaaacttactccgatttaaaaatttcttatagttctaaacatccttatgcatgctggtttcaattc 31422656  T
Q  108 tt 109  Q
    ||    
T  31422655 tt 31422654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 29189287 - 29189206
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||||||||||||||||||||||||| ||||| |||   ||||||||||| ||| || ||  | ||||||||||||||||    
T  29189287 cggtggccggtggtggcaccaccgcgcctgagttcaaaaccactccgattcacaaactttttacatttttaaacatcctttt 29189206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 31411847 - 31411804
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttact 51  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  31411847 cggtggccggtggtggcaccaccgcaccggagttcaaacttact 31411804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 31549543 - 31549577
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  31549543 cggtggccggtggtggcaccaccgcgccggagttt 31549577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 2826905 - 2826874
Alignment:
Q  10 gtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||    
T  2826905 gtggccggtggtggcaccaccgcgccggagtt 2826874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 24693939 - 24694009
Alignment:
Q  19 ggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||| |||||||||||||| | |||  | ||||||||||||| ||| ||| | ||||||||||||||||    
T  24693939 ggtggcgccaccgcgccggagctcaaaacttctccgattcaaaatttttttgcacttttaaacatcctttt 24694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 29185276 - 29185310
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||| ||||||||||    
T  29185276 cggtggccggtggtggcaccaccgtgccggagttt 29185310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 23568506 - 23568473
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||| |||||||||||||||    
T  23568506 cggtggccggtggtggcatcaccgcgccggagtt 23568473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 2216571 - 2216652
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||||| ||||||||||||||||| ||  | |||||||||||||| || || || ||||||||||||||||    
T  2216571 cggtggccggtggtggcgccaccgcgccggagtttcaaactcctccgattcaaaaactttttatatttttaaacatcctttt 2216652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 16289586 - 16289505
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||||| ||||||||||||||||| ||  | |||||||||||||| || ||  | ||||||||||||||||    
T  16289586 cggtggccggtggtggcgccaccgcgccggagttttaaagtcctccgattcaaaaactttttacatttttaaacatcctttt 16289505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 4444388 - 4444307
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||||||| |||||||||||| |||||||||| |||  | ||||||||||||  ||||||  | ||||||||||||||||    
T  4444388 cggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattcaaatttttcttacatttttaaacatcctttt 4444307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 1005757 - 1005791
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  1005757 cggtggccggtggtggcaccaccgcgccggagttt 1005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 11262297 - 11262379
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgcc-ggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||||| |||||||||| ||||||| ||  | |||||||||||||| || ||    ||||||||||||||||    
T  11262297 cggtggccggtggtggcgccaccgcgccgggagttttaaactcctccgattcaaaaactttttacgtttttaaacatcctttt 11262379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 13603392 - 13603426
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  13603392 cggtggccgatggtggcaccaccgcgccggagttt 13603426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 52987491 - 52987458
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||| |||||||||||||||||||||||||||    
T  52987491 cggtggtcggtggtggcaccaccgcgccggagtt 52987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 5995727 - 5995676
Alignment:
Q  6 cacggtggccggtggtggcaccaccgcgccggagtttaaacttactccgatt 57  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5995727 cacggtggccggtggtggcaccaccgcgccggagttcaaccttactccgatt 5995676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 3042434 - 3042353
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||||||||| ||||||||||||||||| ||  | |||||||||||||| || ||    ||||||||||||||||    
T  3042434 cggtggccggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaaactttttacgtttttaaacatcctttt 3042353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 20216058 - 20215977
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||||||| ||||||||||||||||||||| | |||  | |||||||||||||| || ||  | ||||||||||||||||    
T  20216058 cggtggccggcggtggcaccaccgcgccggagctcaaaacttctccgattcaaaaactttttacatttttaaacatcctttt 20215977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 22110079 - 22109998
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||||||| ||||||||||||||||||||| | |||  | |||||||||||||| || ||  | ||||||||||||||||    
T  22110079 cggtggccggcggtggcaccaccgcgccggagctcaaaacttctccgattcaaaaactttttacatttttaaacatcctttt 22109998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 5488174 - 5488208
Alignment:
Q  6 cacggtggccggtggtggcaccaccgcgccggagt 40  Q
    |||||||||||||||||||||||||||||||||||    
T  5488174 cacggtggccggtggtggcaccaccgcgccggagt 5488208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27048685 - 27048719
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  27048685 cggtggccggtggtggcaccaccgcgccggagttt 27048719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27058929 - 27058963
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  27058929 cggtggccggtggtggcaccaccgcgccggagttt 27058963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 30996959 - 30996993
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  30996959 cggtggccggtggtggcaccaccgcgccggagttt 30996993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 16587842 - 16587761
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||| |||||||||||| ||||||||||||||||| ||  |  ||||||||||||| || ||  | ||||||||||||||||    
T  16587842 cggttgccggtggtggcgccaccgcgccggagtttcaaactcttccgattcaaaaactttttacatttttaaacatcctttt 16587761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 16607538 - 16607619
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||| |||||||||||| ||||||||||||||||| ||  |  ||||||||||||| || ||  | ||||||||||||||||    
T  16607538 cggttgccggtggtggcgccaccgcgccggagtttcaaactcttccgattcaaaaactttttacatttttaaacatcctttt 16607619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24919210 - 24919129
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||||||  ||||||||||||||||||||||  ||  | |||||||||||||| || ||  | ||||||||||||||||    
T  24919210 cggtggccggcagtggcaccaccgcgccggagttcgaaactcctccgattcaaaaactttttacatttttaaacatcctttt 24919129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 15390691 - 15390725
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||| ||||||||||||||||||||||    
T  15390691 cggtggccggtgttggcaccaccgcgccggagttt 15390725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 17092481 - 17092559
Alignment:
Q  11 tggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    ||||||| |||||| ||||| |||||||||| |||  | ||||||||||||||||| ||  | |||| |||||||||||    
T  17092481 tggccggcggtggcgccaccacgccggagttcaaaactcctccgattcaaaaattttttacatttttgaacatcctttt 17092559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24296439 - 24296491
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaa 60  Q
    |||||||||| |||||||||||| |||||||||| |||  | |||||||||||    
T  24296439 cggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattcaa 24296491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24310470 - 24310522
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaa 60  Q
    |||||||||| |||||||||||| |||||||||| |||  | |||||||||||    
T  24310470 cggtggccggcggtggcaccaccacgccggagttcaaaactcctccgattcaa 24310522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 19549 - 19468
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt-taaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||| || ||  | ||||||||||||||||    
T  19549 cggtggccggcggtggcaccaccgcgccggagttctaaac-tcctccgattcaaaaactttttacatttttaaacatcctttt 19468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 2513 - 2594
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||| |||||||||||| ||||||||||||||||| ||  | |||||||||||||| || ||  | ||||||||||||||||    
T  2513 cggtagccggtggtggcgccaccgcgccggagttttaaactcctccgattcaaaaactttttacatttttaaacatcctttt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 429 - 395
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  429 cggtggccggtggtggcaccaccgcgccggagttt 395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 559893 - 559927
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  559893 cggtggccggtggtggcaccaccgcgccggagttt 559927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 569802 - 569836
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  569802 cggtggccggtggtggcaccaccgcgccggagttt 569836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 5200609 - 5200643
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  5200609 cggtggccggtggtggcaccaccgcgccggagttt 5200643  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 5209738 - 5209772
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  5209738 cggtggccggtggtggcaccaccgcgccggagttt 5209772  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 17515800 - 17515834
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  17515800 cggtggccggtggtggcaccaccgcgccggagttt 17515834  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 17537414 - 17537380
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  17537414 cggtggccggtggtggcaccaccgcgccggagttt 17537380  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27967396 - 27967430
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  27967396 cggtggccggtggtggcaccaccgcgccggagttt 27967430  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27976849 - 27976883
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  27976849 cggtggccggtggtggcaccaccgcgccggagttt 27976883  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 38411819 - 38411785
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  38411819 cggtggccggtggtggcaccaccgcgccggagttt 38411785  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 15974777 - 15974744
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  15974777 cggtggccggtggtggcaccaccgcgccggagtt 15974744  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 4185217 - 4185162
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    |||||||||| |||||||||||||||||||||||  ||  | ||||||||||||||    
T  4185217 cggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaa 4185162  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 13737317 - 13737387
Alignment:
Q  19 ggtggcaccaccgcgccggagtttaaacttactccgattcaaaaatttcttgtagttttaaacatcctttt 89  Q
    |||||| |||||||||||||| | |||  | ||||||||||||| ||| ||| | ||||||||||||||||    
T  13737317 ggtggcgccaccgcgccggagctcaaaacttctccgattcaaaatttttttgcacttttaaacatcctttt 13737387  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 16474427 - 16474461
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  16474427 cggtggccgatggtggcaccaccgcgccggagttt 16474461  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 18750239 - 18750205
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  18750239 cggtggccggtggtggcaccaccgcgccggagttt 18750205  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 13463869 - 13463836
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  13463869 cggtggccggtggtggcaccaccgcgccggagtt 13463836  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 18597130 - 18597075
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtttaaacttactccgattcaaaaa 63  Q
    |||||||||| |||||||||||||||||||||||  ||  | ||||||||||||||    
T  18597130 cggtggccggcggtggcaccaccgcgccggagttcgaaactcctccgattcaaaaa 18597075  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 179835 - 179865
Alignment:
Q  11 tggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||||||||||||||||    
T  179835 tggccggtggtggcaccaccgcgccggagtt 179865  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 24529 - 24495
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagttt 42  Q
    ||||||||||||||||||||||||| |||||||||    
T  24529 cggtggccggtggtggcaccaccgcaccggagttt 24495  T

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Target: scaffold0669 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 6041 - 6074
Alignment:
Q  8 cggtggccggtggtggcaccaccgcgccggagtt 41  Q
    |||||||||||||||||||||||| |||||||||    
T  6041 cggtggccggtggtggcaccaccgtgccggagtt 6074  T

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