View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-29 (Length: 211)
Name: Solexa-NF5706-29
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-29 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 27714988 - 27715086
Alignment:
| Q |
2 |
tttattcgctttatatagcattgttgaaaagatatttaagagacacgaatgatcaaaatgtggataataaaagacaacaatgaagaaaaagaatctctc |
100 |
Q |
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| T |
27714988 |
tttattcgctttatatagcattgttgaaaagatatttaagagacacgaatgatcaaaatgtggataataaaagacaacaatgaagaaaaagaatctctc |
27715086 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 27715124 - 27715198
Alignment:
| Q |
137 |
ttttcagattagggtttaactttagcttcttcgtttctaccacactgtagtttgcagaacacttttctaccactc |
211 |
Q |
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| T |
27715124 |
ttttcagtttaggttttaactttagcttcttgtgttctaccacactatagtttgcagaacacttttctaccactc |
27715198 |
T |
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