View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-30 (Length: 142)
Name: Solexa-NF5706-30
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-30 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 32119372 - 32119508
Alignment:
| Q |
3 |
aagaaacggaaagaacggaactatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtg |
102 |
Q |
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| T |
32119372 |
aagaaacggaaagaacggaactatgacatactctattaaagatctgtccacttggagtagaattgaaaaattatacgggggcgcgaaagatgtaaaagtg |
32119471 |
T |
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| Q |
103 |
cattttcttgaagagtatagtagctgtcttataatgt |
139 |
Q |
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| T |
32119472 |
cattttcttgaagagtataggagctgtcttataatgt |
32119508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 9e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 14375015 - 14374918
Alignment:
| Q |
24 |
tatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtata |
121 |
Q |
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| T |
14375015 |
tatgacatactctattaaggatccgtccacttggagtagaatcgaaaaatgacatgggggcgcgaaagatacacaagtgcatttttttgaagagtata |
14374918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 14239144 - 14239276
Alignment:
| Q |
4 |
agaaacggaaagaacggaactatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgc |
103 |
Q |
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| T |
14239144 |
agaaacggaaaaaatgccagtatgacatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgc |
14239243 |
T |
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| Q |
104 |
attttcttgaagagtatagtagctgtcttataa |
136 |
Q |
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| T |
14239244 |
attttattgaagagtatagtagctgtcttataa |
14239276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 41437013 - 41437125
Alignment:
| Q |
24 |
tatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtatagt |
123 |
Q |
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| T |
41437013 |
tatgacatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagt |
41437112 |
T |
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| Q |
124 |
agctgtcttataa |
136 |
Q |
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| T |
41437113 |
agctgtcttataa |
41437125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 41450241 - 41450351
Alignment:
| Q |
26 |
tgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagatgcaaaagtgcattttcttgaagagtatagtag |
125 |
Q |
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||||||| |||||||| ||| || |||||||||||||||| ||||| | | |||||||| || ||||| ||||||||||| |||||||||||||||| |
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| T |
41450241 |
tgacatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtag |
41450340 |
T |
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| Q |
126 |
ctgtcttataa |
136 |
Q |
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| T |
41450341 |
ctgtcttataa |
41450351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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