View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-33 (Length: 141)
Name: Solexa-NF5706-33
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-33 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 6e-72; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 210389 - 210249
Alignment:
| Q |
1 |
caaagaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaag |
100 |
Q |
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| T |
210389 |
caaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaag |
210290 |
T |
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| Q |
101 |
ggcagaggatgctgccaatgcattcaacccgaaaaaccctc |
141 |
Q |
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| T |
210289 |
ggcagaggatgctgccaatgcattcaacccgaaaaaccctc |
210249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 197099 - 196975
Alignment:
| Q |
16 |
ctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaagggcagaggatgctgc |
115 |
Q |
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| T |
197099 |
ctagtcctacgaaaaggtccaaggttgaaacaagtgagtgtcatgggaaaaaggccaaaagcgtgtctaaacatgcttctacaagagcagaggttgctgc |
197000 |
T |
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| Q |
116 |
caatgcattcaacccgaaaaaccct |
140 |
Q |
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| T |
196999 |
caatgaattcaaaccaaaaaaccct |
196975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 221928 - 221886
Alignment:
| Q |
10 |
agtgtcctaggcctatgaaaaggtccaaggttgaaacaagtga |
52 |
Q |
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| T |
221928 |
agtgtcatagtcctaggaaaaggtccaaggttgaaacaagtga |
221886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 205166 - 205218
Alignment:
| Q |
88 |
atgcttataaaagggcagaggatgctgccaatgcattcaacccgaaaaaccct |
140 |
Q |
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| T |
205166 |
atgcttttaaaagtgcagaggttgctgccaatgaattcaatccaaaaaaccct |
205218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 216972 - 216941
Alignment:
| Q |
21 |
cctatgaaaaggtccaaggttgaaacaagtga |
52 |
Q |
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| T |
216972 |
cctaggaaaaggtccaaggttgaaacaagtga |
216941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 29838241 - 29838128
Alignment:
| Q |
27 |
aaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaagggcagaggatgctgccaatgcattca |
126 |
Q |
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| T |
29838241 |
aaaaggtccaaggttgaaacatgtgagaggcttcggaaaaaggtcaaaaacatgtctaaatatgcttctaaaagagtagaggatgccgccaaagaactca |
29838142 |
T |
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| Q |
127 |
acccgaaaaaccct |
140 |
Q |
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| T |
29838141 |
acccaaacaaccct |
29838128 |
T |
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