View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5706-39 (Length: 130)

Name: Solexa-NF5706-39
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5706-39
Solexa-NF5706-39
[»] chr7 (9 HSPs)
chr7 (4-130)||(21972010-21972136)
chr7 (4-129)||(31166472-31166597)
chr7 (38-97)||(41539516-41539575)
chr7 (86-130)||(31166982-31167027)
chr7 (67-100)||(15578104-15578137)
chr7 (86-130)||(21971582-21971627)
chr7 (67-100)||(28750658-28750691)
chr7 (67-100)||(38916124-38916157)
chr7 (62-106)||(36785964-36786008)
[»] chr4 (10 HSPs)
chr4 (4-130)||(28104278-28104404)
chr4 (4-130)||(919033-919159)
chr4 (4-108)||(12639251-12639355)
chr4 (38-99)||(20644756-20644816)
chr4 (54-99)||(25163504-25163549)
chr4 (86-130)||(12639749-12639794)
chr4 (67-100)||(23643762-23643795)
chr4 (86-130)||(38147440-38147485)
chr4 (67-100)||(54714595-54714628)
chr4 (86-129)||(917726-917770)
[»] chr3 (6 HSPs)
chr3 (4-130)||(23566478-23566604)
chr3 (4-130)||(39737249-39737375)
chr3 (86-130)||(23566917-23566962)
chr3 (67-100)||(53153576-53153609)
chr3 (62-106)||(18715228-18715272)
chr3 (86-129)||(39737752-39737796)
[»] chr2 (7 HSPs)
chr2 (4-130)||(29771217-29771343)
chr2 (4-129)||(39864817-39864942)
chr2 (4-130)||(4330057-4330180)
chr2 (86-130)||(39865326-39865371)
chr2 (86-130)||(4329647-4329692)
chr2 (67-100)||(9914558-9914591)
chr2 (86-130)||(29770815-29770860)
[»] chr8 (3 HSPs)
chr8 (7-130)||(147125-147234)
chr8 (54-99)||(14200158-14200203)
chr8 (86-130)||(26759252-26759297)
[»] chr1 (2 HSPs)
chr1 (54-99)||(23270027-23270072)
chr1 (67-100)||(40889126-40889159)
[»] chr6 (8 HSPs)
chr6 (55-99)||(10777280-10777324)
chr6 (62-96)||(8924794-8924828)
chr6 (62-96)||(8935051-8935085)
chr6 (67-100)||(8701244-8701277)
chr6 (67-100)||(12307050-12307083)
chr6 (67-99)||(605326-605358)
chr6 (62-106)||(4296680-4296724)
chr6 (67-99)||(7727118-7727150)
[»] chr5 (2 HSPs)
chr5 (67-100)||(25672611-25672644)
chr5 (86-130)||(39121862-39121907)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 1e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 21972010 - 21972136
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21972010 aagaatgagaagcacgagcgcgtgtggtatttaactatgtaaaggacagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 21972109  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| |||||||| ||||||||||||    
T  21972110 ttttacatttaattaagatgaattaag 21972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 31166597 - 31166472
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  31166597 aagaatgagaagcacgcgctcgtgtggtatttaactgtgtaaaggaaagaaaatttgcagtattaaatacaactattttttgttttaattaattgacata 31166498  T
Q  104 ttttatatttaattgagatgaattaa 129  Q
     |||| ||||| ||||||||||||||    
T  31166497 gtttacatttatttgagatgaattaa 31166472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 41539575 - 41539516
Alignment:
Q  38 ctgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagtt 97  Q
    ||||||||| ||||| |||||||||  |||||||||| |||||| |||||||||||||||    
T  41539575 ctgtgtaaaggaaaggaaatttgcataattaaatacagctattttttattttaattagtt 41539516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 31166982 - 31167027
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31166982 ttttaattagttgacatatattatactttaattgagatgaattaag 31167027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 15578104 - 15578137
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  15578104 taaatacaactatatcttattttaattagttgac 15578137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 21971627 - 21971582
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||    
T  21971627 ttttaattagttgacatatattatactttaattgagatgagttaag 21971582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 28750691 - 28750658
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  28750691 taaatacaactatatcttattttaattagttgac 28750658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 38916157 - 38916124
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  38916157 taaatacaactatatcttattttaattagttgac 38916124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 36785964 - 36786008
Alignment:
Q  62 agtattaaatacaactatttcttattttaattagttgacatattt 106  Q
    |||||||||||||||| ||| |||||||||||| ||||| |||||    
T  36785964 agtattaaatacaactcttttttattttaattaattgacttattt 36786008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 1e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 28104278 - 28104404
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28104278 aagaatgagaagcacgcgtgcatgtggtatttagctgtgtaaaggaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgatata 28104377  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| |||||||||||||||||||||    
T  28104378 ttttacatttaattgagatgaattaag 28104404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 919033 - 919159
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    ||||||||||||||||||| |||||| |||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  919033 aagaatgagaagcacgcgcacgtgtgatatttagctatgtaaatgaaagaacatttgcagtattaaatacaactatttcttattttaattagttgatata 919132  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| |||||||||||||||||||||    
T  919133 ttttacatttaattgagatgaattaag 919159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 12639355 - 12639251
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12639355 aagaatgagaagcacgcgcgcgtgtggtatttagatgtgtaaaggaaagaaaatttgcagtattaaatacaactattttttattttaattagttgacata 12639256  T
Q  104 tttta 108  Q
    |||||    
T  12639255 tttta 12639251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 20644816 - 20644756
Alignment:
Q  38 ctgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttga 99  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  20644816 ctgtgtaaatgaaaggaaatttgcagtattaaatacaactattt-ttattttaattaattga 20644756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 25163549 - 25163504
Alignment:
Q  54 aaatttgcagtattaaatacaactatttcttattttaattagttga 99  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  25163549 aaatttgcactattaaatataactatttcttattttatttagttga 25163504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 12639749 - 12639794
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  12639749 ttttaattagttgacatattttacactttaattgaggtgaattaag 12639794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 23643762 - 23643795
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  23643762 taaatacaactatatcttattttaattagttgac 23643795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 38147485 - 38147440
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||    
T  38147485 ttttaattagttgacatatattacactttaattgagatgaattaag 38147440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 54714628 - 54714595
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  54714628 taaatacaactatatcttattttaattagttgac 54714595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 917770 - 917726
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaa 129  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||    
T  917770 ttttaattagttgacatatattacactttaattgagatgaattaa 917726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 7e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 23566604 - 23566478
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  23566604 aagaatgagaagcacgcgctcgtgtggtatttaactgtgtaaaggaatgaaaatttgcagtattaaatacaactattttttgttttaattagttgacata 23566505  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
     |||| ||||| |||||||||||||||    
T  23566504 gtttacatttatttgagatgaattaag 23566478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 39737375 - 39737249
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||||||||||||| ||| ||||||| ||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  39737375 aagaatgagaagcatgcgtgcgtgtgatatttaaatgtgtaaaggaaagaaaatatacagtattaaatacaactatttcttattttaattagttgacata 39737276  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| |||||||||||||| ||||||    
T  39737275 ttttacatttaattgagatggattaag 39737249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 23566917 - 23566962
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23566917 ttttaattagttgacatatattatactttaattgagatgaattaag 23566962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 53153609 - 53153576
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  53153609 taaatacaactatatcttattttaattagttgac 53153576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 18715272 - 18715228
Alignment:
Q  62 agtattaaatacaactatttcttattttaattagttgacatattt 106  Q
    |||||||||||||||||| | |||||||||||| ||||| |||||    
T  18715272 agtattaaatacaactatcttttattttaattaattgacttattt 18715228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 39737752 - 39737796
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaa 129  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||    
T  39737752 ttttaattagttaacatatattatattttaattgagatgaattaa 39737796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 29771217 - 29771343
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||| |||||||||||||||||||||||||||||||||    
T  29771217 aagagtgaaaagcacgcgcgcgtgtggtatttaactgtgtaaaggaaagaaattttgttgtattaattacaactatttcttattttaattagttgacata 29771316  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| || ||||||||||||||||||    
T  29771317 ttttacatataattgagatgaattaag 29771343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 39864942 - 39864817
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||    
T  39864942 aagaatgagaagcacgcgctcgtgtggtatttaactgtgtaaaggaaagaaaatttgcagtattaaatataactattttttgttttaattaattgacata 39864843  T
Q  104 ttttatatttaattgagatgaattaa 129  Q
     |||| ||||| ||||||||||||||    
T  39864842 gtttacatttatttgagatgaattaa 39864817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 4330057 - 4330180
Alignment:
Q  4 aagaatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacata 103  Q
    |||||||||||||||||||||||   ||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  4330057 aagaatgagaagcacgcgcgcgtc--gtatttagctatgtaaaggaaagaaaatttgcagtattaaatacaactattt-ttattttaattagttaacata 4330153  T
Q  104 ttttatatttaattgagatgaattaag 130  Q
    ||||| |||||||||||||||||||||    
T  4330154 ttttacatttaattgagatgaattaag 4330180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 39865326 - 39865371
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39865326 ttttaattagttgacatatattatactttaattgagatgaattaag 39865371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 4329692 - 4329647
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||    
T  4329692 ttttaattagttgacatatattacactttaattgagatgaattaag 4329647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 9914558 - 9914591
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  9914558 taaatacaactatatcttattttaattagttgac 9914591  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 29770860 - 29770815
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  29770860 ttttaattagttgacatatattatactttaactgagatgaattaag 29770815  T

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Target: chr8 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 147125 - 147234
Alignment:
Q  7 aatgagaagcacgcgcgcgtgtggtatttaactgtgtaaacgaaagaaaatttgcagtattaaatacaactatttcttattttaattagttgacatattt 106  Q
    |||||||||||||||||| |||| |||||| ||||||||| |||||||||||||  |||||              |||||||||||||||||||||||||    
T  147125 aatgagaagcacgcgcgcatgtgatatttagctgtgtaaaggaaagaaaatttgaggtatt--------------cttattttaattagttgacatattt 147210  T
Q  107 tatatttaattgagatgaattaag 130  Q
    ||||||||||| ||||||||||||    
T  147211 tatatttaattaagatgaattaag 147234  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 14200158 - 14200203
Alignment:
Q  54 aaatttgcagtattaaatacaactatttcttattttaattagttga 99  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  14200158 aaatttgcactattaaatataactatttcttattttaattagttga 14200203  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 26759297 - 26759252
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  26759297 ttttaattagttggcatatattatactttaattgagatgaattaag 26759252  T

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Target: chr1 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 23270072 - 23270027
Alignment:
Q  54 aaatttgcagtattaaatacaactatttcttattttaattagttga 99  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  23270072 aaatttgcactattaaatataactatttcttattttaattagttga 23270027  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 40889126 - 40889159
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  40889126 taaatacaactatatcttattttaattagttgac 40889159  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 10777324 - 10777280
Alignment:
Q  55 aatttgcagtattaaatacaactatttcttattttaattagttga 99  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  10777324 aatttgcactattaaatataactatttcttattttaattagttga 10777280  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 8924794 - 8924828
Alignment:
Q  62 agtattaaatacaactatttcttattttaattagt 96  Q
    |||||||||||||||| ||||||||||||||||||    
T  8924794 agtattaaatacaactttttcttattttaattagt 8924828  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 8935051 - 8935085
Alignment:
Q  62 agtattaaatacaactatttcttattttaattagt 96  Q
    |||||||||||||||| ||||||||||||||||||    
T  8935051 agtattaaatacaactttttcttattttaattagt 8935085  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 8701244 - 8701277
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  8701244 taaatacaactatatcttattttaattagttgac 8701277  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 12307083 - 12307050
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  12307083 taaatacaactatatcttattttaattagttgac 12307050  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 605326 - 605358
Alignment:
Q  67 taaatacaactatttcttattttaattagttga 99  Q
    ||||||||||||| |||||||||||||||||||    
T  605326 taaatacaactatatcttattttaattagttga 605358  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 4296724 - 4296680
Alignment:
Q  62 agtattaaatacaactatttcttattttaattagttgacatattt 106  Q
    |||||||||||||||| | | |||||||||||||||||| |||||    
T  4296724 agtattaaatacaactctcttttattttaattagttgacttattt 4296680  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 7727150 - 7727118
Alignment:
Q  67 taaatacaactatttcttattttaattagttga 99  Q
    ||||||||||||| |||||||||||||||||||    
T  7727150 taaatacaactatatcttattttaattagttga 7727118  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 25672611 - 25672644
Alignment:
Q  67 taaatacaactatttcttattttaattagttgac 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  25672611 taaatacaactatatcttattttaattagttgac 25672644  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 39121862 - 39121907
Alignment:
Q  86 ttttaattagttgacatattttata-tttaattgagatgaattaag 130  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||    
T  39121862 ttttaattagttgacatatattatactttaattgagataaattaag 39121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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