View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5706-4 (Length: 88)

Name: Solexa-NF5706-4
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5706-4
Solexa-NF5706-4
[»] chr4 (8 HSPs)
chr4 (8-88)||(7004231-7004311)
chr4 (8-88)||(7027055-7027135)
chr4 (8-88)||(7046843-7046923)
chr4 (13-88)||(7013752-7013827)
chr4 (38-88)||(7052875-7052925)
chr4 (38-86)||(7020192-7020240)
chr4 (34-88)||(6994317-6994371)
chr4 (42-88)||(7039509-7039555)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 9e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-39
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 7004311 - 7004231
Alignment:
Q  8 ggtagtagaagcaacaaatagatattatggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7004311 ggtagtagaagcaacaaatagatattatggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 7004231  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 7027135 - 7027055
Alignment:
Q  8 ggtagtagaagcaacaaatagatattatggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  7027135 ggtagtagaagcaacaaatagagattatggttggaaacctggagatttatcaatggctggagacctttttcatttcctgtt 7027055  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 7046923 - 7046843
Alignment:
Q  8 ggtagtagaagcaacaaatagatattatggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7046923 ggtagtagaagcaacaaatagagattatgattggaaacctggagatttatcaatggttggtgaccttcttcatttcctgtt 7046843  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 7013827 - 7013752
Alignment:
Q  13 tagaagcaacaaatagatattatggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    ||||||||||  | ||| ||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  7013827 tagaagcaactgacagagattatggttcggaaccttgagatttatcaatggttggagacctttttcatttcctgtt 7013752  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 7052925 - 7052875
Alignment:
Q  38 ttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  7052925 ttggaaacctggagatttatcaatggttggagtcctttttcatttcctgtt 7052875  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 7020240 - 7020192
Alignment:
Q  38 ttggaaacctggagatttatcaatggttggtgacctttttcatttcctg 86  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  7020240 ttggaaacctggagatttatcaatggttggagtcctttttcatttcctg 7020192  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 6994371 - 6994317
Alignment:
Q  34 atggttggaaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    |||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  6994371 atggtttggaaccttgagatttatcaatggttggagacctttttcatttcctgtt 6994317  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 7039555 - 7039509
Alignment:
Q  42 aaacctggagatttatcaatggttggtgacctttttcatttcctgtt 88  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||    
T  7039555 aaacctggagatttatcaatggtaggagtcctttttcatttcctgtt 7039509  T

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