View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-46 (Length: 124)
Name: Solexa-NF5706-46
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 5688211 - 5688325
Alignment:
| Q |
10 |
tttcctccaccacttcacccttccggattaatagtaaagcaaaaacctaactagtatcttaattcgtcaatcttcttcgaatttgataaagttcacaaag |
109 |
Q |
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| T |
5688211 |
tttcatccaccagttcacccttccggattaatagtaaagcaaaaacctaactagtatcttaattcgtcaatcttcttcgaatttgataaagttcacaaag |
5688310 |
T |
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| Q |
110 |
aaatagtacatgtgg |
124 |
Q |
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| T |
5688311 |
aaatagtacatgtgg |
5688325 |
T |
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