View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-50 (Length: 111)
Name: Solexa-NF5706-50
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-50 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 6901947 - 6901855
Alignment:
| Q |
19 |
ggaggctagacgtacatgagttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcacaggagggctctcctcgatcagctca |
111 |
Q |
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| T |
6901947 |
ggaggctagatgtgcatgagttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcacaggagggttctcctcgatcagctca |
6901855 |
T |
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Target: chr3 (Bit Score: 77; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 209820 - 209912
Alignment:
| Q |
19 |
ggaggctagacgtacatgagttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcacaggagggctctcctcgatcagctca |
111 |
Q |
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| T |
209820 |
ggaggctagatgtacatgagttgttaatcccaatagtcaaccacacaaaacatcgtgacttctagcacaggagggttctcctcgatcagctca |
209912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 206393 - 206472
Alignment:
| Q |
19 |
ggaggctagacgtacatgagttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcacaggagggctctc |
98 |
Q |
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| T |
206393 |
ggaggctagatgtacatgagttgttaatcgcaatagtcaaccacatgaaacatcgtgacttctagcacaggagggttctc |
206472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 221438 - 221493
Alignment:
| Q |
31 |
tacatgagttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcac |
86 |
Q |
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| T |
221438 |
tacataagttgttaatcgccatagtcagccgcacgaaacattgtgacttttagcac |
221493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 196601 - 196637
Alignment:
| Q |
51 |
atagtcaaccacacgaaacatcgtgacttctagcaca |
87 |
Q |
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| T |
196601 |
atagtcaaccgcacgaaacattgtgacttctagcaca |
196637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 29837752 - 29837801
Alignment:
| Q |
38 |
gttgttaatcgcaatagtcaaccacacgaaacatcgtgacttctagcaca |
87 |
Q |
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| T |
29837752 |
gttgttaatcgcaatagtcaatagcacgaaacattgtgacttttagcaca |
29837801 |
T |
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