View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-59 (Length: 106)
Name: Solexa-NF5706-59
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-59 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold1896 (1 HSPs) |
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| [»] scaffold1487 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 9e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 9e-49
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 20622204 - 20622305
Alignment:
| Q |
5 |
gagaagaaagtgacaacaaaatcgaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaac |
104 |
Q |
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| T |
20622204 |
gagaagaaagtgacaacagaatcgaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaac |
20622303 |
T |
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| Q |
105 |
aa |
106 |
Q |
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|| |
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| T |
20622304 |
aa |
20622305 |
T |
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Target: chr5 (Bit Score: 84; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 31422471 - 31422569
Alignment:
| Q |
5 |
gagaagaaagtgacaacaaaatcgaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaac |
104 |
Q |
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| T |
31422471 |
gagaagaaagtgacaacagaatcgaaccggaatacataccgagccaaaccggatctgaaccgta---gaagaggtaagccgaaccggtacgaaaagtaac |
31422567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 31411616 - 31411694
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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| T |
31411616 |
gaaccggaatacataccgagccaaaccggatctgaaccatagaagaagaggtaagccgaaccggtacgagaagtaacaa |
31411694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 26875394 - 26875316
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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| T |
26875394 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgagaagtaacaa |
26875316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 26872936 - 26872858
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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| T |
26872936 |
gaaccggaatacataccgagccaaaccggatctgaatcgtagaggaagaggtaagccgaaccggtacgagaagtaacaa |
26872858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 12997304 - 12997382
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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| T |
12997304 |
gaaccagaatacataccgagccaaactggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
12997382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1896 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold1896
Description:
Target: scaffold1896; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 209 - 287
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
209 |
gaaccagaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagctgaaccggtacgagaagtaacaa |
287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1487 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: scaffold1487
Description:
Target: scaffold1487; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 143 - 65
Alignment:
| Q |
28 |
gaaccggaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagccgaaccggtacgaaaagtaacaa |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
143 |
gaaccagaatacataccgagccaaaccggatctgaaccgtagaggaagaggtaagctgaaccggtacgagaagtaacaa |
65 |
T |
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