View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-62 (Length: 140)
Name: Solexa-NF5706-62
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-62 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 6e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 4499798 - 4499669
Alignment:
| Q |
11 |
cacagaaaaaccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatattatatccctttccatttaacaccgttagt |
110 |
Q |
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| T |
4499798 |
cacagaaaaaccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatattatatcccttttcatttaacaccgttagt |
4499699 |
T |
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| Q |
111 |
actctgttcgaaattaaaaatgtagtgtct |
140 |
Q |
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| T |
4499698 |
actctgttagaaattaaaaatgtagtgtct |
4499669 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 41805206 - 41805249
Alignment:
| Q |
35 |
ttttataataaacattaacctcccctaaggtcttttaaaatata |
78 |
Q |
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| T |
41805206 |
ttttataatagacataaacctcccctaagatcttttaaaatata |
41805249 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 39673766 - 39673807
Alignment:
| Q |
35 |
ttttataataaacattaacctcccctaaggtcttttaaaata |
76 |
Q |
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| T |
39673766 |
ttttataatagatattaacctcccctaagttcttttaaaata |
39673807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 39673843 - 39673884
Alignment:
| Q |
32 |
taattttataataaacattaacctcccctaaggtcttttaaa |
73 |
Q |
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| T |
39673843 |
taattttataatagatattaacctcccctaagttcttttaaa |
39673884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 52282320 - 52282359
Alignment:
| Q |
35 |
ttttataataaacattaacctcccctaaggtcttttaaaa |
74 |
Q |
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| T |
52282320 |
ttttataatagacattaacctcccttaaagtcttttaaaa |
52282359 |
T |
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