View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-64 (Length: 103)
Name: Solexa-NF5706-64
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-64 |
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| [»] scaffold0813 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0813 (Bit Score: 95; Significance: 5e-47; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 3728 - 3830
Alignment:
| Q |
1 |
cataggtcacgagtacataccgaacatggtagacaagggtctgatgtttgagtttgttgagaggtggcatagacagatggacagtttccacctacttcct |
100 |
Q |
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| T |
3728 |
cataggccacgagtacataccgaacatggtagacaagggtctgatgtttgagtttgtttagaggtggcatagacagatggacagtttccacctacttcct |
3827 |
T |
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| Q |
101 |
atg |
103 |
Q |
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||| |
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| T |
3828 |
atg |
3830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6618254 - 6618152
Alignment:
| Q |
1 |
cataggtcacgagtacataccgaacatggtagacaagggtctgatgtttgagtttgttgagaggtggcatagacagatggacagtttccacctacttcct |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6618254 |
cataggccacgagtacataccgaacatggtagacaagggtctgatgtttgagtttgtttagaggtggcatagacagatggacagtttccacctacttcct |
6618155 |
T |
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| Q |
101 |
atg |
103 |
Q |
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||| |
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| T |
6618154 |
atg |
6618152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 6526697 - 6526607
Alignment:
| Q |
2 |
ataggtcacgagtacataccgaacatggtagacaagggtctgatgtttgagtttgttgagaggtggcatagacagatggacagtttccacc |
92 |
Q |
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||||| |||||||| |||| |||||||||||||| |||| |||| ||||||||||||||| | |||| | ||| |||||||||||||| |
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| T |
6526697 |
ataggacacgagtatatacagaacatggtagacatatgtctcatgtctgagtttgttgagagacgtcataaagagacggacagtttccacc |
6526607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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