View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-68 (Length: 174)
Name: Solexa-NF5706-68
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-68 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 6e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 41382310 - 41382145
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
41382310 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaat-tgggccaacatgcgtttggtgaaaagttagggttgtggat |
41382212 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
174 |
Q |
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| T |
41382211 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
41382145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 7971911 - 7971746
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
7971911 |
gcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc-aacatgcttttggtgaaaagttagggttgtggat |
7971813 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
174 |
Q |
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| T |
7971812 |
tgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgca |
7971746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 8041777 - 8041942
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
8041777 |
gcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc-aacatgcttttggtgaaaagttagggttgtggat |
8041875 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
174 |
Q |
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| T |
8041876 |
tgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgca |
8041942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 8031898 - 8032063
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
8031898 |
gcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaat-taggtcaacatgcgtttggcgaaaagttaggcctttatat |
8031996 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
174 |
Q |
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| T |
8031997 |
tgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgca |
8032063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 7979479 - 7979324
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
7979479 |
gcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaat-taggtcaacatgcttttgggaaaaaattaggtctttatat |
7979381 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcac |
164 |
Q |
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| T |
7979380 |
tgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcac |
7979324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 3434 - 3269
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
3434 |
gcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaa-ctgggacaacacgcgtttggcgaaaagttaggcctttatat |
3336 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgca |
174 |
Q |
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|||| |||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
3335 |
tgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccggaggtgca |
3269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 14198876 - 14198715
Alignment:
| Q |
8 |
gcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaatntgggccaacatgcgtttggtgaaaagttagggttgtggat |
107 |
Q |
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| T |
14198876 |
gcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaa-ctgggtcaatatgcttttggtgaaaagttgggtctgtatat |
14198778 |
T |
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| Q |
108 |
tgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggagg |
170 |
Q |
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||| |||| ||||||||| | || |||| || || |||||||||||||||| |||||||| |
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| T |
14198777 |
tgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg |
14198715 |
T |
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