View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5706-70 (Length: 110)

Name: Solexa-NF5706-70
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5706-70
Solexa-NF5706-70
[»] chr6 (3 HSPs)
chr6 (23-110)||(8383898-8383985)
chr6 (18-79)||(23593851-23593912)
chr6 (23-79)||(8383237-8383293)
[»] chr2 (1 HSPs)
chr2 (18-110)||(23462481-23462573)
[»] chr1 (3 HSPs)
chr1 (23-110)||(36272427-36272514)
chr1 (24-110)||(6767998-6768084)
chr1 (25-106)||(37422478-37422559)
[»] chr7 (1 HSPs)
chr7 (18-91)||(44541607-44541680)
[»] chr5 (1 HSPs)
chr5 (23-73)||(472961-473011)
[»] chr8 (1 HSPs)
chr8 (25-106)||(6013051-6013132)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 5e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 8383985 - 8383898
Alignment:
Q  23 gatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccaccaaact 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8383985 gatcttattatggtctgcacacactatatatttcccaactttgtcttcaacctcactgtcgtctctctcatttaaccaccaccaaact 8383898  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 23593912 - 23593851
Alignment:
Q  18 tcaccgatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcact 79  Q
    |||| ||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  23593912 tcactgattttattatagtatgcatacactatatctttcccaactttgtcttcaacctcact 23593851  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 8383237 - 8383293
Alignment:
Q  23 gatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcact 79  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||| |||||||||||    
T  8383237 gatcttattataatctacacacactatatctttccccactttgtcatcaacctcact 8383293  T

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Target: chr2 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 23462481 - 23462573
Alignment:
Q  18 tcaccgatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccaccaaact 110  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  23462481 tcactgatcttattatagtctgcacacactatatctttctcaactttgtcttcaacctcactatcatctctatcatttcaccaccaccaaact 23462573  T

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Target: chr1 (Bit Score: 68; Significance: 7e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 36272514 - 36272427
Alignment:
Q  23 gatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccaccaaact 110  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  36272514 gatcttattatagtctgcacacactatatctttctcaactttgtcttcaacctcactatcatctctatcatttcaccaccaccaaact 36272427  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 6768084 - 6767998
Alignment:
Q  24 atcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccaccaaact 110  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  6768084 atcttattatagtctgcacacattatatctttctcaactttgtcttcaacctcactatcatctctatcatttcaccaccaccaaact 6767998  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 37422478 - 37422559
Alignment:
Q  25 tcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccacca 106  Q
    ||||||||||||||||| ||||| ||| |||||  ||||| ||||||||||||||  |||||||||||||| ||||||||||    
T  37422478 tcttattatagtctgcaaacactgtatctttccagactttatcttcaacctcactaccatctctctcatttcaccaccacca 37422559  T

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Target: chr7 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 44541680 - 44541607
Alignment:
Q  18 tcaccgatcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctc 91  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||| ||||||    
T  44541680 tcaccaatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 44541607  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 473011 - 472961
Alignment:
Q  23 gatcttattatagtctgcacacactatatatttcccaactttgtcttcaac 73  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  473011 gatcttattataatctgcacacactatatcttttccaactttgtcttcaac 472961  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 6013051 - 6013132
Alignment:
Q  25 tcttattatagtctgcacacactatatatttcccaactttgtcttcaacctcactgtcatctctctcatttaaccaccacca 106  Q
    |||||||||||| |||| ||||  ||| |||||  ||||| ||||||||||||||  ||||||||||||||  |||||||||    
T  6013051 tcttattatagtatgcaaacacggtatctttccagactttatcttcaacctcactaccatctctctcatttcgccaccacca 6013132  T

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