View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5706-71 (Length: 108)
Name: Solexa-NF5706-71
Description: NF5706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5706-71 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 43226458 - 43226505
Alignment:
| Q |
29 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
76 |
Q |
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| T |
43226458 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
43226505 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 43226565 - 43226594
Alignment:
| Q |
64 |
actcaagctccaatgccacaaaatcacctt |
93 |
Q |
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| T |
43226565 |
actcaagctccaatgccacaaaatcacctt |
43226594 |
T |
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