View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-10 (Length: 130)
Name: Solexa-NF5709-10
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 9e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 9e-68
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 49373553 - 49373682
Alignment:
| Q |
1 |
gagcagagaaatttaagcatgatgaattgacactataatcacgaacctgatcaccatccttgataccataatctctaagataatccgtttctgtaactaa |
100 |
Q |
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| T |
49373553 |
gagcagagaaatttaagcatgatgaattgacactataatcacgaacctgatcaccatccttgataccataatctctaagataatccgtttctgtaactaa |
49373652 |
T |
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| Q |
101 |
cttctgtccttcatagcataaacaaaactg |
130 |
Q |
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| T |
49373653 |
cttctgtccttcatagcataaacaaaactg |
49373682 |
T |
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Target: chr6 (Bit Score: 75; Significance: 6e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 14245244 - 14245376
Alignment:
| Q |
5 |
agagaaatttaagcatgatgaattgacactataatcacgaacctg-------atcaccatccttgataccataatctctaagataatccgtttctgtaac |
97 |
Q |
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| T |
14245244 |
agagaaatttaagtatgatgaattgacacaatgatcacgaacctgttcagtgatcaccatctttgataccataatctctaagataattcgtttcagtaac |
14245343 |
T |
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| Q |
98 |
taacttctgtccttcatagcataaacaaaactg |
130 |
Q |
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| T |
14245344 |
taacttctctccttcatagcataaataaaactg |
14245376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 265638 - 265747
Alignment:
| Q |
19 |
atgatgaattgacactataatcacgaacctgatcaccatccttgataccataatctctaagataa-tccgtttctgtaactaacttctgtccttcatagc |
117 |
Q |
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||||||||||||||| ||||| || ||||||||||||| ||||| |||||||| | |||||||| | ||||||| |||||| |||| ||||||||||| |
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| T |
265638 |
atgatgaattgacacaataatgacaaacctgatcaccactcttgaaaccataatttttaagataattttgtttctgaaactaatttctatccttcatagc |
265737 |
T |
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| Q |
118 |
ataaacaaaa |
127 |
Q |
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| T |
265738 |
ataaacaaaa |
265747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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