View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5709-11 (Length: 145)

Name: Solexa-NF5709-11
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5709-11
Solexa-NF5709-11
[»] chr4 (31 HSPs)
chr4 (3-126)||(48647716-48647839)
chr4 (9-113)||(54473529-54473633)
chr4 (20-113)||(50526178-50526271)
chr4 (3-115)||(50052418-50052530)
chr4 (3-118)||(23608230-23608345)
chr4 (47-113)||(31910192-31910258)
chr4 (9-113)||(11511458-11511562)
chr4 (9-115)||(480443-480549)
chr4 (9-113)||(6034044-6034148)
chr4 (3-115)||(29239884-29239996)
chr4 (9-113)||(41236347-41236451)
chr4 (9-116)||(48183045-48183152)
chr4 (43-116)||(55475188-55475261)
chr4 (46-113)||(40574779-40574846)
chr4 (8-113)||(3481654-3481759)
chr4 (3-114)||(28480258-28480369)
chr4 (3-114)||(28481133-28481244)
chr4 (3-114)||(28482008-28482119)
chr4 (43-113)||(8343193-8343263)
chr4 (9-115)||(24995103-24995209)
chr4 (43-117)||(29547989-29548063)
chr4 (9-115)||(42044363-42044469)
chr4 (42-116)||(47104541-47104615)
chr4 (43-118)||(55079744-55079819)
chr4 (8-114)||(50813887-50813993)
chr4 (9-114)||(29234241-29234346)
chr4 (43-115)||(19670746-19670818)
chr4 (77-113)||(29535377-29535413)
chr4 (43-115)||(32766956-32767028)
chr4 (45-109)||(53352598-53352661)
chr4 (43-114)||(47986207-47986278)
[»] chr1 (29 HSPs)
chr1 (19-113)||(37649198-37649292)
chr1 (9-115)||(32813245-32813351)
chr1 (9-113)||(27564731-27564835)
chr1 (9-113)||(47452316-47452420)
chr1 (19-114)||(51898689-51898784)
chr1 (19-115)||(2581913-2582009)
chr1 (43-115)||(23597121-23597193)
chr1 (9-113)||(48716278-48716382)
chr1 (45-116)||(49811559-49811630)
chr1 (9-115)||(38632317-38632423)
chr1 (9-113)||(43132-43236)
chr1 (9-113)||(9474872-9474976)
chr1 (43-114)||(37926468-37926539)
chr1 (9-108)||(44548372-44548471)
chr1 (9-113)||(3000319-3000423)
chr1 (9-113)||(26440734-26440838)
chr1 (40-115)||(5959027-5959102)
chr1 (9-115)||(8346384-8346490)
chr1 (9-115)||(38595152-38595258)
chr1 (19-113)||(6260870-6260964)
chr1 (9-87)||(13414787-13414865)
chr1 (43-113)||(41608523-41608593)
chr1 (43-113)||(50591030-50591100)
chr1 (3-112)||(44453980-44454089)
chr1 (52-117)||(45044599-45044664)
chr1 (9-114)||(50630457-50630562)
chr1 (45-113)||(3302565-3302633)
chr1 (43-114)||(7740732-7740803)
chr1 (9-108)||(26274437-26274536)
[»] chr7 (35 HSPs)
chr7 (9-115)||(19436183-19436289)
chr7 (9-117)||(7389385-7389493)
chr7 (3-115)||(18207178-18207289)
chr7 (9-114)||(3434561-3434666)
chr7 (21-114)||(46033809-46033902)
chr7 (9-113)||(19329842-19329946)
chr7 (9-108)||(3784000-3784099)
chr7 (9-115)||(8080379-8080485)
chr7 (9-113)||(38267040-38267144)
chr7 (9-108)||(3694372-3694471)
chr7 (9-112)||(35522877-35522980)
chr7 (9-115)||(40957705-40957811)
chr7 (45-113)||(21234401-21234469)
chr7 (9-113)||(35137533-35137637)
chr7 (43-114)||(26296643-26296714)
chr7 (3-113)||(4999504-4999614)
chr7 (43-113)||(46374832-46374902)
chr7 (50-115)||(35468892-35468957)
chr7 (3-116)||(36208170-36208283)
chr7 (9-114)||(36361909-36362014)
chr7 (61-113)||(31735884-31735936)
chr7 (9-115)||(38837215-38837321)
chr7 (3-113)||(39255914-39256023)
chr7 (9-114)||(36362025-36362130)
chr7 (48-113)||(40846148-40846213)
chr7 (47-115)||(10343597-10343665)
chr7 (40-115)||(7727904-7727979)
chr7 (9-108)||(32951489-32951588)
chr7 (52-114)||(22343360-22343422)
chr7 (43-113)||(32564456-32564526)
chr7 (3-113)||(41423682-41423792)
chr7 (52-115)||(38044195-38044258)
chr7 (43-114)||(41915740-41915811)
chr7 (52-113)||(8238212-8238274)
chr7 (64-115)||(11044186-11044237)
[»] chr2 (31 HSPs)
chr2 (9-116)||(10249378-10249485)
chr2 (3-115)||(33436090-33436202)
chr2 (19-114)||(32505654-32505749)
chr2 (9-114)||(5574484-5574589)
chr2 (9-113)||(40613898-40614002)
chr2 (9-116)||(9058477-9058584)
chr2 (44-114)||(33436210-33436280)
chr2 (9-115)||(42257191-42257297)
chr2 (3-108)||(28863460-28863565)
chr2 (9-113)||(13438343-13438447)
chr2 (9-113)||(17473020-17473124)
chr2 (9-113)||(28381651-28381755)
chr2 (19-113)||(4060685-4060779)
chr2 (2-120)||(7465724-7465842)
chr2 (9-115)||(30915461-30915567)
chr2 (45-113)||(40701478-40701546)
chr2 (8-113)||(43490121-43490226)
chr2 (3-115)||(20700813-20700925)
chr2 (9-108)||(19930816-19930915)
chr2 (45-115)||(38273174-38273244)
chr2 (3-107)||(3439985-3440089)
chr2 (40-115)||(26891531-26891606)
chr2 (43-114)||(36168835-36168906)
chr2 (3-112)||(44151924-44152037)
chr2 (3-113)||(17819994-17820104)
chr2 (45-114)||(2533123-2533191)
chr2 (8-113)||(27864704-27864809)
chr2 (40-113)||(38732354-38732427)
chr2 (45-117)||(17823780-17823852)
chr2 (43-115)||(45097765-45097837)
chr2 (40-115)||(38882841-38882915)
[»] chr5 (26 HSPs)
chr5 (9-114)||(2740273-2740378)
chr5 (45-116)||(15409642-15409713)
chr5 (40-114)||(6679697-6679771)
chr5 (40-113)||(28177775-28177848)
chr5 (19-115)||(31008986-31009082)
chr5 (19-113)||(14831814-14831908)
chr5 (3-108)||(18520874-18520979)
chr5 (9-113)||(26720516-26720620)
chr5 (9-113)||(26990265-26990369)
chr5 (9-113)||(35785199-35785303)
chr5 (3-113)||(35943882-35943992)
chr5 (9-113)||(33149634-33149738)
chr5 (34-118)||(33825345-33825429)
chr5 (9-113)||(42414298-42414402)
chr5 (9-115)||(36732938-36733044)
chr5 (10-115)||(13811650-13811755)
chr5 (9-113)||(40145407-40145511)
chr5 (43-114)||(2252198-2252269)
chr5 (40-118)||(9603808-9603886)
chr5 (43-115)||(3921295-3921367)
chr5 (54-108)||(36875644-36875698)
chr5 (40-113)||(6260028-6260101)
chr5 (52-113)||(20073555-20073616)
chr5 (6-117)||(16327897-16328008)
chr5 (52-109)||(10356638-10356696)
chr5 (52-117)||(39688936-39689001)
[»] chr8 (31 HSPs)
chr8 (9-113)||(43414577-43414681)
chr8 (8-115)||(10284626-10284733)
chr8 (9-113)||(1179936-1180040)
chr8 (9-113)||(12831047-12831151)
chr8 (19-114)||(37038478-37038573)
chr8 (19-113)||(504127-504221)
chr8 (43-113)||(20074964-20075034)
chr8 (3-108)||(5957835-5957940)
chr8 (9-116)||(14547919-14548026)
chr8 (9-113)||(15197333-15197437)
chr8 (9-113)||(23122593-23122697)
chr8 (9-113)||(34012292-34012396)
chr8 (45-111)||(10621119-10621185)
chr8 (52-114)||(17443824-17443886)
chr8 (52-116)||(4854902-4854966)
chr8 (45-113)||(15048214-15048281)
chr8 (9-113)||(40423939-40424043)
chr8 (8-115)||(34307214-34307321)
chr8 (3-93)||(8841422-8841512)
chr8 (43-113)||(30479504-30479574)
chr8 (45-115)||(42221513-42221583)
chr8 (40-114)||(44507114-44507188)
chr8 (52-113)||(14055631-14055692)
chr8 (61-114)||(25838196-25838249)
chr8 (43-115)||(16056431-16056503)
chr8 (43-115)||(16383375-16383447)
chr8 (52-117)||(24307832-24307897)
chr8 (52-115)||(24307627-24307690)
chr8 (3-117)||(15258919-15259033)
chr8 (8-113)||(38229429-38229533)
chr8 (43-114)||(32032724-32032794)
[»] chr6 (19 HSPs)
chr6 (9-114)||(31976247-31976352)
chr6 (9-113)||(17598554-17598658)
chr6 (9-106)||(32869685-32869782)
chr6 (9-108)||(22880654-22880753)
chr6 (9-115)||(6209461-6209567)
chr6 (9-114)||(11427615-11427722)
chr6 (45-115)||(31110793-31110861)
chr6 (43-116)||(15990072-15990145)
chr6 (52-113)||(31953069-31953130)
chr6 (3-115)||(12732480-12732592)
chr6 (9-113)||(29857827-29857931)
chr6 (43-115)||(30341390-30341462)
chr6 (43-113)||(15508054-15508124)
chr6 (9-106)||(946383-946480)
chr6 (4-109)||(9379703-9379808)
chr6 (40-115)||(15832575-15832650)
chr6 (9-108)||(23128123-23128222)
chr6 (46-108)||(28536519-28536581)
chr6 (79-114)||(22422084-22422119)
[»] chr3 (31 HSPs)
chr3 (3-118)||(33118841-33118956)
chr3 (9-115)||(49607412-49607518)
chr3 (40-113)||(26141559-26141632)
chr3 (43-115)||(11347952-11348024)
chr3 (9-113)||(53982011-53982115)
chr3 (43-114)||(24699984-24700055)
chr3 (9-116)||(41189760-41189867)
chr3 (45-116)||(54868927-54868998)
chr3 (3-113)||(8076393-8076503)
chr3 (40-118)||(11095380-11095458)
chr3 (4-118)||(14623830-14623944)
chr3 (40-114)||(35536625-35536699)
chr3 (9-113)||(33644200-33644304)
chr3 (9-113)||(47531865-47531969)
chr3 (9-109)||(52629304-52629404)
chr3 (9-108)||(48587087-48587186)
chr3 (43-113)||(20764945-20765015)
chr3 (43-113)||(51419390-51419460)
chr3 (9-114)||(17470404-17470509)
chr3 (10-115)||(27714888-27714993)
chr3 (43-116)||(35965804-35965877)
chr3 (4-108)||(13898046-13898150)
chr3 (9-116)||(11907368-11907475)
chr3 (9-108)||(31456694-31456793)
chr3 (4-115)||(35093583-35093694)
chr3 (44-114)||(8956761-8956831)
chr3 (45-115)||(36707456-36707526)
chr3 (3-110)||(26754698-26754805)
chr3 (52-113)||(45058592-45058652)
chr3 (54-108)||(30801774-30801828)
chr3 (76-114)||(48375769-48375807)
[»] scaffold1268 (1 HSPs)
scaffold1268 (3-113)||(919-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (3-113)||(919-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (40-115)||(10136-10211)
[»] scaffold0237 (1 HSPs)
scaffold0237 (9-113)||(4029-4133)
[»] scaffold0110 (1 HSPs)
scaffold0110 (54-113)||(8904-8963)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 7e-38; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 48647716 - 48647839
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| |||||||||||||||||| | ||| |||||||||||||||||||||||||||||| || | ||||||||| |||||||||||| ||||    
T  48647716 gagaggaaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatg 48647815  T
Q  103 tatcataactcttaatcattattc 126  Q
    | ||||||||||||||||||||||    
T  48647816 tgtcataactcttaatcattattc 48647839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 54473529 - 54473633
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||||||| |||||||||||||  | ||| |||| ||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||    
T  54473529 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcat 54473628  T
Q  109 aactc 113  Q
     ||||    
T  54473629 tactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 50526178 - 50526271
Alignment:
Q  20 gtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||  |||||||| ||||||| |||||||||||||||| ||||    
T  50526178 gtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 50052418 - 50052530
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||||||||||||    
T  50052418 gagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 50052517  T
Q  103 tatcataactctt 115  Q
    |||||| ||||||    
T  50052518 tatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 23608345 - 23608230
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||| ||||| ||| |||||||||| ||| ||||| |||| |||||| |||||||| |||||||||||||  ||||||||||| |||||| |||||||     
T  23608345 gagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctata 23608246  T
Q  103 tatcataactcttaat 118  Q
    |||||| |||||||||    
T  23608245 tatcattactcttaat 23608230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  47 gtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 11511458 - 11511562
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| ||||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  11511458 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 11511557  T
Q  109 aactc 113  Q
     ||||    
T  11511558 tactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 480443 - 480549
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| |||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||    
T  480443 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 480542  T
Q  109 aactctt 115  Q
     ||||||    
T  480543 tactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 6034148 - 6034044
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| || ||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  6034148 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 6034049  T
Q  109 aactc 113  Q
     ||||    
T  6034048 tactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 29239996 - 29239884
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||| ||  | ||| |||| ||||||||||||||| ||||| |||||||  |||||||| ||||||||| ||||||||    
T  29239996 gagaggaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatg 29239897  T
Q  103 tatcataactctt 115  Q
    |||||| ||||||    
T  29239896 tatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 41236451 - 41236347
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  41236451 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 41236352  T
Q  109 aactc 113  Q
     ||||    
T  41236351 tactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 48183045 - 48183152
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||| ||||| ||||||||||||||    
T  48183045 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcat 48183144  T
Q  109 aactctta 116  Q
     |||||||    
T  48183145 tactctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 55475261 - 55475188
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||| ||| |||||||| |||||||||||||  |||||||| ||||||||||||| ||||||||||||||||||    
T  55475261 ccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctta 55475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  46 cgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||| |||||||| |||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 3481759 - 3481654
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| |||||||||| ||  | ||| |||| | |||| |||||||| ||||||||||||| ||||||||| ||||||| | |||||||||||||    
T  3481759 gaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatca 3481660  T
Q  108 taactc 113  Q
    | ||||    
T  3481659 ttactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28480258 - 28480369
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||||||| || ||| |||| ||||| ||  | ||| |||| || ||| |||||||| |||| |||| || |||||||||||||||||||| ||||||||    
T  28480258 gagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatg 28480357  T
Q  103 tatcataactct 114  Q
    ||| ||||||||    
T  28480358 tattataactct 28480369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28481133 - 28481244
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||||||| || ||| |||| ||||| ||  | ||| |||| || ||| |||||||| |||| |||| || |||||||||||||||||||| ||||||||    
T  28481133 gagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatg 28481232  T
Q  103 tatcataactct 114  Q
    ||| ||||||||    
T  28481233 tattataactct 28481244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28482008 - 28482119
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||||||| || ||| |||| ||||| ||  | ||| |||| || ||| |||||||| |||| |||| || |||||||||||||||||||| ||||||||    
T  28482008 gagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatg 28482107  T
Q  103 tatcataactct 114  Q
    ||| ||||||||    
T  28482108 tattataactct 28482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 8343193 - 8343263
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||||||| |||||||||   ||||||| ||||||||||||| |||||||||||||||    
T  8343193 ccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 24995103 - 24995209
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| | ||||||||||||||||||||  |||||||| || |||||| |||| || ||||||    
T  24995103 aaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcat 24995202  T
Q  109 aactctt 115  Q
     ||||||    
T  24995203 tactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 29547989 - 29548063
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaa 117  Q
    |||| ||| |||||||| ||||||||||||    ||||||| ||||||||||||| |||||||||||||||||||    
T  29547989 ccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactcttaa 29548063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 42044363 - 42044469
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||  ||   ||||||| ||||||||| ||||||||||||||    
T  42044363 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcat 42044462  T
Q  109 aactctt 115  Q
     ||||||    
T  42044463 tactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 47104615 - 47104541
Alignment:
Q  42 accacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    ||||||||| | |||||| ||||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||    
T  47104615 accacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactctta 47104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 55079744 - 55079819
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaat 118  Q
    |||| ||| |||||||| | |||||||||| | |||||||| ||||||||| ||| ||||||||||||||| ||||    
T  55079744 ccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactcctaat 55079819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 50813887 - 50813993
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| ||| |||||||||  ||||  ||||||| ||| |||||||| ||||||||||||   |||||||  ||||||||  ||| |||||||||    
T  50813887 gaaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatca 50813986  T
Q  108 taactct 114  Q
    |||||||    
T  50813987 taactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 29234241 - 29234346
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||  ||| |||||  |||||||| || |||||| ||||||||||||||    
T  29234241 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcat 29234340  T
Q  109 aactct 114  Q
     |||||    
T  29234341 tactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 19670746 - 19670818
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| |||| |||||||   |||||||| ||||||||| ||| |||||||||||||||||    
T  19670746 ccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 29535413 - 29535377
Alignment:
Q  77 tgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||||||||  |||||||||||||||||||    
T  29535413 tgtattgtcacctaagattgtctatgtatcataactc 29535377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 32767028 - 32766956
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| | ||||||||||   |||||||| ||||||||  ||| |||||||||||||||||    
T  32767028 ccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 53352598 - 53352661
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcata 109  Q
    |||||| |||||||| ||| ||||| ||| | ||||||| ||||||||| |||||||||||||||    
T  53352598 acgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcata 53352661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 47986278 - 47986207
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||| ||| |||||||| ||||| ||||||    ||||||| ||||||||| ||| ||||||||||||||||    
T  47986278 ccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 4e-30; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37649292 - 37649198
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||| ||||    
T  37649292 tgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 32813351 - 32813245
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||  ||||||||||| |||||||| ||||||||| |||  |||||||| ||||||||||||||||||||||||    
T  32813351 aaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 32813252  T
Q  109 aactctt 115  Q
    |||||||    
T  32813251 aactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 27564731 - 27564835
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||  |||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  27564731 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 27564830  T
Q  109 aactc 113  Q
     ||||    
T  27564831 tactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 47452316 - 47452420
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| ||||||||||||||| |||||||||||||  |||||||  ||||||||| ||||||||||||||    
T  47452316 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 47452415  T
Q  109 aactc 113  Q
     ||||    
T  47452416 tactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 51898689 - 51898784
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||||||||| || ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||| |||||||||||||||| |||||    
T  51898689 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 2582009 - 2581913
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| |||||||||||||| ||||||    
T  2582009 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 23597121 - 23597193
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||||| |||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||| ||||||    
T  23597121 ccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 48716278 - 48716382
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||||||| |||||||||||||  | ||| |||| |||||| |||||||| ||||| |||||||  |||||||| ||||||||| ||||||||||||||    
T  48716278 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcat 48716377  T
Q  109 aactc 113  Q
     ||||    
T  48716378 tactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 49811559 - 49811630
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactctta 49811630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 38632317 - 38632423
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||| ||| |||| |||||||| ||||||||| ||||||||||||||    
T  38632317 aaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcat 38632416  T
Q  109 aactctt 115  Q
     ||||||    
T  38632417 tactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 43236 - 43132
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||| | ||| |||| |||||| |||||||| |||||||||||||   ||||||||| ||||||  ||||||||||||||    
T  43236 aaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcat 43137  T
Q  109 aactc 113  Q
     ||||    
T  43136 tactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 9474872 - 9474976
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||| ||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  9474872 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9474971  T
Q  109 aactc 113  Q
     ||||    
T  9474972 tactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 37926468 - 37926539
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||| |||||||||||||||||| ||||  ||||||| ||||||| ||| ||||||||||||||||||    
T  37926468 ccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 44548372 - 44548471
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  44548372 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 3000423 - 3000319
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| |||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||| ||||||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcat 3000324  T
Q  109 aactc 113  Q
     ||||    
T  3000323 tactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26440838 - 26440734
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||| ||||| || ||  || |||||||| |||||||| ||||||||| |||  ||||||||||| |||||||||||||| |||| |    
T  26440838 aaagagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcct 26440739  T
Q  109 aactc 113  Q
    |||||    
T  26440738 aactc 26440734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 5959027 - 5959102
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||| ||| |||||||| |||||||||||| | |||||||| ||| ||||| ||| |||||||||||||||||    
T  5959027 tgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactctt 5959102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 8346384 - 8346490
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||| |  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||| | || |||||||||||    
T  8346384 aaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcat 8346483  T
Q  109 aactctt 115  Q
     ||||||    
T  8346484 tactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 38595258 - 38595152
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| |||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||| | ||| ||||||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcat 38595159  T
Q  109 aactctt 115  Q
     ||||||    
T  38595158 tactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 6260964 - 6260870
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||| |||||  | ||| ||||||| ||||||||||||||||||||||  |   |||||||  ||||||||||| ||||| |||||||||||    
T  6260964 tgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataactc 6260870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 13414865 - 13414787
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcac 87  Q
    ||||| ||| |||||||||| ||  | ||| |||| ||||||||||||||| |||||||||||||  ||||||||||||    
T  13414865 aaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgtcac 13414787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 41608523 - 41608593
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||| |||| |||||||   |||||||| ||||||||||||| |||||||||||||||    
T  41608523 ccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 50591030 - 50591100
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||||||||    
T  50591030 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 44454089 - 44453980
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||| || || ||| | ||||| ||| |||||||| ||||||| |||| |  ||||||| ||| ||| | ||||||||    
T  44454089 gagaggaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatg 44453990  T
Q  103 tatcataact 112  Q
    ||||||||||    
T  44453989 tatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 45044599 - 45044664
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaa 117  Q
    |||||||| | |||||||||||  |||||||| ||||||||||  | |||||||||||||||||||    
T  45044599 agatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactcttaa 45044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 50630562 - 50630457
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||  ||||   ||||||| ||||||||| | ||||||||||||    
T  50630562 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcat 50630463  T
Q  109 aactct 114  Q
     |||||    
T  50630462 tactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 3302565 - 3302633
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| |||||||| |||||||||| |  | | ||||||||||||||||||| |||||||||| ||||    
T  3302565 acgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattactc 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 7740803 - 7740732
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||| | |||||||||| ||||||||    ||||||||||| ||||| |||| |||||||||||||||    
T  7740803 ccacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactct 7740732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 26274536 - 26274437
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||| ||||||| | || ||| |||| | |||| |||||||| ||||| |||||||   ||||||| ||| ||||| ||||||||||||||    
T  26274536 aaagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcat 26274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 9e-28; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 19436183 - 19436289
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||| ||||| || ||| |||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  19436183 aaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcat 19436282  T
Q  109 aactctt 115  Q
     ||||||    
T  19436283 tactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 7389493 - 7389385
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 7389394  T
Q  109 aactcttaa 117  Q
     ||||||||    
T  7389393 tactcttaa 7389385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 18207289 - 18207178
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||||||||| ||| |||||||||| ||  ||||| || ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||||||||    
T  18207289 gagatgaaagagaaagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatg 18207191  T
Q  103 tatcataactctt 115  Q
    |||||||||||||    
T  18207190 tatcataactctt 18207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 3434666 - 3434561
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| || ||||| |||||||||||||  |||||||| ||||||||||||||||||||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 3434567  T
Q  109 aactct 114  Q
     |||||    
T  3434566 tactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 46033809 - 46033902
Alignment:
Q  21 tgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||||||| ||||  ||||||||||| |||||||||||||||||| |||  |||||||| |||||||| || ||||||||||||||||||    
T  46033809 tgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 19329946 - 19329842
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||  |||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  19329946 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 19329847  T
Q  109 aactc 113  Q
     ||||    
T  19329846 tactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 3784099 - 3784000
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| |||||||| ||||||||||||||  ||||||| ||||||||| ||||||||||||||    
T  3784099 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 8080379 - 8080485
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||||||| |||||||||  |||||||| ||||||||| ||||||||||||||    
T  8080379 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 8080478  T
Q  109 aactctt 115  Q
     ||||||    
T  8080479 tactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 38267144 - 38267040
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||||||| ||||| ||||||||||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcat 38267045  T
Q  109 aactc 113  Q
     ||||    
T  38267044 tactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 3694471 - 3694372
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| |||||||| ||||||||| |||| |||||||||||||||||| ||| ||| ||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcat 3694372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 35522980 - 35522877
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||  || |||||||| |||||||| ||||||||| |||  |||||||| ||| ||||||||||||||||||||    
T  35522980 aaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T
Q  109 aact 112  Q
    ||||    
T  35522880 aact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 40957811 - 40957705
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| ||| || ||| |||| |||||| |||||||| ||||||| ||||| ||||||||| ||||||||  ||||||||||||||    
T  40957811 aaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcat 40957712  T
Q  109 aactctt 115  Q
     ||||||    
T  40957711 tactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 21234469 - 21234401
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| | |||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  21234469 acgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 35137637 - 35137533
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||| ||||||||  | ||| |||| ||||||||||||||| |||||||||||||  |||||||| ||||||||| ||||||| ||||||    
T  35137637 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcat 35137538  T
Q  109 aactc 113  Q
     ||||    
T  35137537 tactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 26296714 - 26296643
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||| | |||||||||||||| ||| |||  || ||||||||||||||||||||||||||||||||||||    
T  26296714 ccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 4999504 - 4999614
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||| ||||| ||| |||| ||||||||  | ||| |||| |||| | |||||||| |||||||||||||| |||||||| || |||||| ||||||||    
T  4999504 gagataaaagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatg 4999603  T
Q  103 tatcataactc 113  Q
    |||||| ||||    
T  4999604 tatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 46374832 - 46374902
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||| |||||||| ||||||||| |||  |||| ||| |||||||||||||||||||||||||||||    
T  46374832 ccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 35468892 - 35468957
Alignment:
Q  50 ttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||||||||||||||||||||   ||||||| || ||||||||||||||||||||| ||||||    
T  35468892 ttagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 36208283 - 36208170
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| ||||||||||| |  | ||| ||||||| ||| || ||||| ||||||||||||  | ||||||  ||||||||| ||||||||    
T  36208283 gagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatg 36208184  T
Q  103 tatcataactctta 116  Q
    ||||||||||||||    
T  36208183 tatcataactctta 36208170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 36361909 - 36362014
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||| ||  | ||| |||| |||||| |||||||| |||||||||||||   ||||||| ||||||||| ||||||||||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcat 36362008  T
Q  109 aactct 114  Q
     |||||    
T  36362009 tactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 31735936 - 31735884
Alignment:
Q  61 tgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  31735936 tgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 38837321 - 38837215
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||| |||||  ||  |||||||| ||||||||| ||||||||||||||    
T  38837321 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcat 38837222  T
Q  109 aactctt 115  Q
     ||||||    
T  38837221 tactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 39255914 - 39256023
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||||||||| ||| ||| |||||| ||| | ||| || |||||||| |||||||| | ||||| ||||   |||||||| ||||||||| ||||||||    
T  39255914 gagatgaaagagaaagtgttcttgtgtggagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatg 39256012  T
Q  103 tatcataactc 113  Q
    |||||||||||    
T  39256013 tatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 36362130 - 36362025
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||| ||  | ||| |||| |||||| |||||||| |||||||||||||   ||||||  ||||||||| ||||||||||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcat 36362031  T
Q  109 aactct 114  Q
     |||||    
T  36362030 tactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 40846148 - 40846213
Alignment:
Q  48 tgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||||||| ||||| ||||||   |||||||| ||||||||||||| |||||||||||||||    
T  40846148 tgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  47 gtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| |||||||| |||||||||||| | |||||||  ||||||||| |||||||||||||| ||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 7727979 - 7727904
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||| ||| |||||||||||||  |||||| | |||||||  ||||||||| ||| |||||||||||||||||    
T  7727979 tgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactctt 7727904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 32951489 - 32951588
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| ||||||||||||||| ||||| ||| |||   |||||||||| |||||  ||||||||||||||    
T  32951489 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 22343422 - 22343360
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||| ||||||||||||   |||||||| ||||||||| ||| ||||||||||||||||    
T  22343422 agatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 32564456 - 32564526
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||| ||||||||||||   |||||||| |||||||| |||| |||||||||||||||    
T  32564456 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 41423792 - 41423682
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||||||||| ||| | ||||||| ||| ||  || ||||||| ||| |||||||| |||  ||||||| | |||||||  || |||| ||||||||||    
T  41423792 gagatgaaagagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatg 41423693  T
Q  103 tatcataactc 113  Q
    |||||||||||    
T  41423692 tatcataactc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 38044258 - 38044195
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||||| ||||| ||||||   |||||||| ||||||||| ||| |||||||||||||||||    
T  38044258 agatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 41915811 - 41915740
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||| ||| |||||||| ||| ||||||||   |||||||| ||||||||| ||| ||||||||||||||||    
T  41915811 ccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8238274 - 8238212
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcaccta-aggatgtctatgtatcataactc 113  Q
    |||||||| |||||||||||||  |||||||| |||||| ||| ||| |||||||||||||||    
T  8238274 agatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 11044237 - 11044186
Alignment:
Q  64 gggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||||||   ||||||| ||||||||| |||||||||||||| ||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 6e-26; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 10249378 - 10249485
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  10249378 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcat 10249477  T
Q  109 aactctta 116  Q
     |||||||    
T  10249478 tactctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 33436090 - 33436202
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||||||  | ||| |||| ||||||||||||||| |||||||||||||  |||||||| ||||||||| ||||||||    
T  33436090 gagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatg 33436189  T
Q  103 tatcataactctt 115  Q
    |||||| ||||||    
T  33436190 tatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 32505654 - 32505749
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  32505654 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 5574484 - 5574589
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| ||||||||||||||||||||||  |||||||| ||||||||  ||||||||||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 5574583  T
Q  109 aactct 114  Q
     |||||    
T  5574584 tactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 40613898 - 40614002
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||  || |||||||| |||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||    
T  40613898 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 40613997  T
Q  109 aactc 113  Q
    |||||    
T  40613998 aactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 9058584 - 9058477
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  9058584 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9058485  T
Q  109 aactctta 116  Q
     |||||||    
T  9058484 tactctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 33436280 - 33436210
Alignment:
Q  44 cacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||    
T  33436280 cacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 42257297 - 42257191
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||  || |||||||| ||||||||||||||||||||||   ||||||| ||||||| ||||||||||||||||    
T  42257297 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcat 42257198  T
Q  109 aactctt 115  Q
    |||||||    
T  42257197 aactctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 28863565 - 28863460
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||| ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||    
T  28863565 gagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatg 28863466  T
Q  103 tatcat 108  Q
    ||||||    
T  28863465 tatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 13438447 - 13438343
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||   ||||||||||||||||| ||||||||||||||    
T  13438447 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcat 13438348  T
Q  109 aactc 113  Q
     ||||    
T  13438347 tactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 17473124 - 17473020
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| |||||||| |||||||||||||  |||||||| || |||||| ||||||||||||||    
T  17473124 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 17473025  T
Q  109 aactc 113  Q
     ||||    
T  17473024 tactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 28381651 - 28381755
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||| | ||  |||| |||||| |||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||    
T  28381651 aaagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcat 28381750  T
Q  109 aactc 113  Q
     ||||    
T  28381751 tactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 4060779 - 4060685
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||| ||||| || ||| | || |||||| |||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||| ||||    
T  4060779 tgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 7465724 - 7465842
Alignment:
Q  2 agagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctat 101  Q
    |||||| ||||| ||| |||||||||| ||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| || |||||| |||||||    
T  7465724 agagataaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctat 7465823  T
Q  102 gtatcataactcttaatca 120  Q
    ||||||| ||||| |||||    
T  7465824 gtatcattactctaaatca 7465842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 30915567 - 30915461
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| |||  | ||| |||| |||||| ||||||||||||||| ||||||  |||||||| ||||||||| ||||||||||||||    
T  30915567 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcat 30915468  T
Q  109 aactctt 115  Q
     ||||||    
T  30915467 tactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 40701546 - 40701478
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| |||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  40701546 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 43490226 - 43490121
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||||||| ||| |||||||||  | ||  || |||| ||| |||||||| ||||||||||||   |||||||||||||||||| ||| |||||||||    
T  43490226 gaaagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatca 43490127  T
Q  108 taactc 113  Q
    ||||||    
T  43490126 taactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 20700925 - 20700813
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| ||||||| |||||  | ||| |||| |||||| |||||||| ||| || ||||||  |||||||| ||| ||||||||||||||    
T  20700925 gagaggaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatg 20700826  T
Q  103 tatcataactctt 115  Q
    |||||| ||||||    
T  20700825 tatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 19930816 - 19930915
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||| ||||||||  | ||| |||| |||||| |||||||| ||||| |||||||  |||||||| ||||||||| ||||||||||||||    
T  19930816 aaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 38273174 - 38273244
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||| |||||||| ||||||||| |||  |||||||| || ||||| ||||||||||||||||||||||    
T  38273174 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 3440089 - 3439985
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||||||  | ||| | | ||| |||||||||||| |||||||||| |  ||||||||| ||||||||| |||||| |    
T  3440089 gagaggaaagagaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacg 3439990  T
Q  103 tatca 107  Q
    |||||    
T  3439989 tatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 26891531 - 26891606
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||| ||| |||||||| |||||||||| |   |||||||| ||||||||| || ||||||||||||||||||    
T  26891531 tgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctt 26891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 36168906 - 36168835
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||| | |||||| |||||| || |||   |||||||||| |||||||||||||||||||||||||||    
T  36168906 ccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 44152037 - 44151924
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacc---tgaccacgtgttagatttttat-gtgggtgtcaaaaagtgtattgtcacctaaggatgtc 98  Q
    ||||||||||| ||| |||||||||| || ||||||    | ||||||||| |||||||| | || ||||| ||| ||||||||||||||||  | ||||    
T  44152037 gagatgaaagagaaagtgtgcttgtgtgggattcactacataaccacgtgtcagattttttttgtaggtgttaaagagtgtattgtcacctatagttgtc 44151938  T
Q  99 tatgtatcataact 112  Q
    ||||||||||||||    
T  44151937 tatgtatcataact 44151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 17819994 - 17820104
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||||||||| ||| |||| ||||| ||  | ||| | ||||| ||| |||||||| ||||||||||||   |||||||| ||||||  | ||||||||    
T  17819994 gagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatg 17820093  T
Q  103 tatcataactc 113  Q
    |||||||||||    
T  17820094 tatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 2533191 - 2533123
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||| |||||||| ||||| |||||||   ||||||| ||| ||||||||||||||||||||||||||    
T  2533191 acgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 27864809 - 27864704
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| ||||||| |||||  | ||| |||  |||||| |||||||| ||||| |||||||  |||||||| ||| ||||| |||||||||||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatca 27864710  T
Q  108 taactc 113  Q
    | ||||    
T  27864709 ttactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 38732427 - 38732354
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||| ||| |||||||| ||||||||||||    ||||||||||| ||||| ||| |||||||||||||||    
T  38732427 tgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 17823852 - 17823780
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaa 117  Q
    |||||| |||||||| |||||||||  |  | ||||||| ||||||||||||| |||||||||| ||||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactcttaa 17823780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 45097765 - 45097837
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| | ||||||||||    ||||||| ||||||||||||| |||||||||||||||||    
T  45097765 ccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 38882841 - 38882915
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| |||||| |||||||| ||||| |||||||  || ||||| ||||||||| |||||||||||||| ||||||    
T  38882841 tgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 9e-25; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 2740378 - 2740273
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||    
T  2740378 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 2740279  T
Q  109 aactct 114  Q
     |||||    
T  2740278 tactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 15409642 - 15409713
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  15409642 acgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactctta 15409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 6679771 - 6679697
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||||||| |||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  6679771 tgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 28177848 - 28177775
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||| |||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  28177848 tgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 31009082 - 31008986
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    ||||||||||||| || ||| |||| |||||| |||||||| |||||||||  || | ||||||||||||||||||||| |||||||||||||||||    
T  31009082 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 14831908 - 14831814
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||||| || ||| |||| |||||| ||||||||||||||||||||||  |||||||| ||||||||  |||||||||||||| ||||    
T  14831908 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 18520874 - 18520979
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||| ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||    
T  18520874 gagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatg 18520973  T
Q  103 tatcat 108  Q
    ||||||    
T  18520974 tatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26720620 - 26720516
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||  || |||||||| |||||||| ||| ||||| |||  |||||||| ||||||||||||||||||||||||    
T  26720620 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26720521  T
Q  109 aactc 113  Q
    |||||    
T  26720520 aactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 26990369 - 26990265
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||  || |||||||| |||||||| ||| ||||| |||  |||||||| ||||||||||||||||||||||||    
T  26990369 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26990270  T
Q  109 aactc 113  Q
    |||||    
T  26990269 aactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 35785303 - 35785199
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||| |||||||| || ||| | || |||||| |||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  35785303 aaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 35785204  T
Q  109 aactc 113  Q
     ||||    
T  35785203 tactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 35943882 - 35943992
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||| || || ||| | || |||||| |||||||| |||||||||||||   ||||||| ||||||||| ||||||||    
T  35943882 gagaggaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatg 35943981  T
Q  103 tatcataactc 113  Q
    |||||||||||    
T  35943982 tatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 33149634 - 33149738
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| | |||||| |||||||||||||  |||||||  ||||||||| ||||||||||||||    
T  33149634 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 33149733  T
Q  109 aactc 113  Q
     ||||    
T  33149734 tactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 33825345 - 33825429
Alignment:
Q  34 ttcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaat 118  Q
    ||||| ||| ||||||| |||||||||||||||||||||  ||||||||| |||||||| ||||||||| ||||| |||| ||||    
T  33825345 ttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactcctaat 33825429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 42414298 - 42414402
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||||||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||  | ||||||||||||||    
T  42414298 aaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcat 42414397  T
Q  109 aactc 113  Q
     ||||    
T  42414398 tactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 36732938 - 36733044
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| | |||| |||||||| |||||||||||||  ||||||||  |||||||| ||||||||||||||    
T  36732938 aaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcat 36733037  T
Q  109 aactctt 115  Q
     ||||||    
T  36733038 tactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 13811755 - 13811650
Alignment:
Q  10 aagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcata 109  Q
    |||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||   ||||||| ||||||||| |||||||||||| |     
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttt 13811656  T
Q  110 actctt 115  Q
    ||||||    
T  13811655 actctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 40145511 - 40145407
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||| ||| |||  |||||||| ||||||||| ||||||||||||||    
T  40145511 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcat 40145412  T
Q  109 aactc 113  Q
     ||||    
T  40145411 tactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 2252198 - 2252269
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||||||| ||||||||||||||||    
T  2252198 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 9603886 - 9603808
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaat 118  Q
    |||||| |||| |||||||| ||| ||||| ||  |||||||| |||||||||||||| |||||||||| |||||||||    
T  9603886 tgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactcttaat 9603808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 3921295 - 3921367
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||||||||||    
T  3921295 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  54 atttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    |||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 6260028 - 6260101
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| |||||||||||||  |||||||| |||  ||||||||||||||| || ||| |||||||||| ||||    
T  6260028 tgaccatgtgttagatttttgcgtgggtgttaaagggtgtattgtcacctatggttgtgtatgtatcattactc 6260101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 20073555 - 20073616
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||||| ||||||||  ||||||||||| |||| ||||||||| |||||| ||||    
T  20073555 agatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 16328008 - 16327897
Alignment:
Q  6 atgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtat 105  Q
    |||||||| ||| |||||||||| |   | ||| ||| ||||||| |||||||||||||||||||||    ||||||| ||||||||||| | ||| |||    
T  16328008 atgaaagaaaaagtgtgcttgtgtgaggtgcacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctat 16327909  T
Q  106 cataactcttaa 117  Q
    ||| ||| ||||    
T  16327908 cattacttttaa 16327897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 10356696 - 10356638
Alignment:
Q  52 agatttttatgtgggtgtcaaaaag-tgtattgtcacctaaggatgtctatgtatcata 109  Q
    |||||||| ||||||||||||   | ||||||| |||||||||||||||||||||||||    
T  10356696 agatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcata 10356638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 39688936 - 39689001
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaa 117  Q
    |||||||| ||||||||||||    ||||||| ||| ||||| ||| |||||||||||||||||||    
T  39688936 agatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactcttaa 39689001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 4e-24; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 43414577 - 43414681
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||  |||||||||||||||||||| |||||||||||||  |||| ||| || |||||||||||||||||||||    
T  43414577 aaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcat 43414676  T
Q  109 aactc 113  Q
    |||||    
T  43414677 aactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 10284626 - 10284733
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| |||||||||||||  | ||| |||| |||||| | |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  10284626 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatca 10284725  T
Q  108 taactctt 115  Q
    ||||||||    
T  10284726 taactctt 10284733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 1179936 - 1180040
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||||| ||| |||| |||||| |||||||| |||||||||||||  |||||||  ||||||||| ||||||||||||||    
T  1179936 aaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 1180035  T
Q  109 aactc 113  Q
     ||||    
T  1180036 tactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 12831151 - 12831047
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||    
T  12831151 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 12831052  T
Q  109 aactc 113  Q
     ||||    
T  12831051 tactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 37038573 - 37038478
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||||||||| || ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||| |||||||||||||||| |||||    
T  37038573 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 504127 - 504221
Alignment:
Q  19 tgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  504127 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 20074964 - 20075034
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 5957940 - 5957835
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||| |||||||| || ||| |||| |||||| |||||||| |||||||||||||  |||||||| |||||||| |||||||||    
T  5957940 gagaggaaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatg 5957841  T
Q  103 tatcat 108  Q
    ||||||    
T  5957840 tatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 14548026 - 14547919
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| |||||||||||| |    
T  14548026 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctt 14547927  T
Q  109 aactctta 116  Q
     |||||||    
T  14547926 tactctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 15197437 - 15197333
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||  ||||||||||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 15197338  T
Q  109 aactc 113  Q
     ||||    
T  15197337 tactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 23122593 - 23122697
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||| |||||  | ||| |||| |||||| |||||||| |||||||||||||| |||||||| ||| ||||| ||||||||||||||    
T  23122593 aaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcat 23122692  T
Q  109 aactc 113  Q
     ||||    
T  23122693 tactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 34012292 - 34012396
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| | |||||| |||||||||||||  |||||||  ||||||||| ||||||||||||||    
T  34012292 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 34012391  T
Q  109 aactc 113  Q
     ||||    
T  34012392 tactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 10621119 - 10621185
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataac 111  Q
    |||||| |||||||| |||||||||||||  |||||||  |||||||||||||||||||||||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 17443886 - 17443824
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||| |||| |||| || |||||||||||||||||||| ||||||||||||||||||||    
T  17443886 agatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataactct 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 4854902 - 4854966
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||||||||||| ||||| |||  |||||||| |||||||||||||||||||||||| |||||||    
T  4854902 agatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctta 4854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 15048214 - 15048281
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| |||||||| ||||| |||||||  |||||||| |||||||||||||||||||||||||||||    
T  15048214 acgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 40423939 - 40424043
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||| |||||||  |||||||| ||||||||| | ||||||||||||    
T  40423939 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcat 40424038  T
Q  109 aactc 113  Q
     ||||    
T  40424039 tactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 34307321 - 34307214
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| ||| |||||||||  ||||  || |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||    
T  34307321 gaaagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatca 34307222  T
Q  108 taactctt 115  Q
    ||||||||    
T  34307221 taactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 8841422 - 8841512
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaagg 93  Q
    |||| |||||| ||| |||||||||||||  | ||| |||| ||||||||||||||| |||||||||||||  ||||| || |||||||||    
T  8841422 gagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 30479504 - 30479574
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||||||||| |||||||  |||||||| ||||||||| ||| |||||||||||||||    
T  30479504 ccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 42221583 - 42221513
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||| |||||||| |||||||||| |  | ||||||||||||||||||||| |||||||||| ||||||    
T  42221583 acgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 44507114 - 44507188
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||| |||||| |||||||| ||||||||| ||| ||||||||  ||||||||| |||||||||||||| |||||    
T  44507114 tgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 14055631 - 14055692
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||| ||||| ||||||  ||||||||||||||||||| |||| ||||||||||||||    
T  14055631 agatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 25838249 - 25838196
Alignment:
Q  61 tgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  25838249 tgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcataactct 25838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 16056431 - 16056503
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| ||||||||||||    ||||||||||| ||||||||| |||||||||||||||||    
T  16056431 ccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactctt 16056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 16383447 - 16383375
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||||||||||    
T  16383447 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 24307832 - 24307897
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaa 117  Q
    |||||||| ||||||||||||    ||||||| ||||||||| ||| |||||||||||||||||||    
T  24307832 agatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactcttaa 24307897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 24307690 - 24307627
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||||| ||||||||||||    ||||||| ||||||||| ||| |||||||||||||||||    
T  24307690 agatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 15258919 - 15259033
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| ||||||||||| |  | ||| ||||||| ||| |||||||||||||| |||| |    ||||||| || |||||  | ||||||    
T  15258919 gagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatg 15259018  T
Q  103 tatcataactcttaa 117  Q
    |||||||||||||||    
T  15259019 tatcataactcttaa 15259033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 38229533 - 38229429
Alignment:
Q  8 gaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatca 107  Q
    |||||| ||| ||||||||| | |||| ||| ||||||| ||| |||||||| |||||||||| |  || |||||| ||||||||  |||  ||||||||    
T  38229533 gaaagagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtc-aggagcgtattgccacctaagagtgttcatgtatca 38229435  T
Q  108 taactc 113  Q
    ||||||    
T  38229434 taactc 38229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 32032794 - 32032724
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||| ||| |||||||| ||||| ||||||  | ||||||| ||||||||| ||| ||||||||||||||||    
T  32032794 ccacatgtcagatttttgtgtggatgtcaagga-tgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 31976352 - 31976247
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  ||||  ||||||||||| |||||||| ||||||||| |||  || ||||| ||||||||||||||||||||||||    
T  31976352 aaagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcat 31976253  T
Q  109 aactct 114  Q
    ||||||    
T  31976252 aactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 17598658 - 17598554
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| ||||||||||||||  ||||||| ||||||||| ||||||||||||||    
T  17598658 aaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 17598559  T
Q  109 aactc 113  Q
     ||||    
T  17598558 tactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 32869782 - 32869685
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatc 106  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||    
T  32869782 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 22880654 - 22880753
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| ||| |||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  22880654 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 6209461 - 6209567
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||| ||||||  | ||| |||| |||||  |||||||| |||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  6209461 aaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcat 6209560  T
Q  109 aactctt 115  Q
     ||||||    
T  6209561 tactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 11427722 - 11427615
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcaccta--aggatgtctatgtatc 106  Q
    ||||| ||| ||||||||||||| || ||| |||| |||||| |||||||| |||||||||||||   ||||||| ||||||  ||| ||||||||||||    
T  11427722 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatc 11427623  T
Q  107 ataactct 114  Q
    || |||||    
T  11427622 attactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 31110793 - 31110861
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||| ||||||||  ||| ||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  31110793 acgtgtcagattttt--gtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 15990072 - 15990145
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| ||||||||||||||||||    
T  15990072 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctta 15990145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 31953069 - 31953130
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||||||||||||||||   |||||||| ||||||||||||||||| |||||| ||||    
T  31953069 agatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 12732592 - 12732480
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    ||||||||||| ||| ||||||| || || || ||| |  |||||||| |||||||| ||||||||||||  | | ||||| ||| |||| |||||||||    
T  12732592 gagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatg 12732493  T
Q  103 tatcataactctt 115  Q
    |||||| ||||||    
T  12732492 tatcattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 29857931 - 29857827
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||| ||||| || ||| | || |||||| |||||||| ||||||||| |||| |||||||| || |||| | ||||||||||||||    
T  29857931 aaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcat 29857832  T
Q  109 aactc 113  Q
     ||||    
T  29857831 tactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 30341390 - 30341462
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||||||||||    
T  30341390 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 15508054 - 15508124
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||| ||| |||||||| ||||||||||||   |||||||| ||||||||| ||| |||||||||||||||    
T  15508054 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 946480 - 946383
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatc 106  Q
    ||||| ||| |||||| | |||| ||| || |||| | |||| ||||||||  || |||||||||  ||||||| |||||||||||||||||||||||    
T  946480 aaagagaaagtgtgctagagcgggatttacgtgactaggtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatc 946383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 9379703 - 9379808
Alignment:
Q  4 agatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgt 103  Q
    |||||||||| ||| |||| ||||| |  || ||| || |||||||| | |||||| | ||||||||||    |||||||||| ||||||||||||||||    
T  9379703 agatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgt 9379802  T
Q  104 atcata 109  Q
    ||||||    
T  9379803 atcata 9379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 15832650 - 15832575
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| |||||| | |||||| |||||||||||||   | ||||||||||||| | |||||||||||||| ||||||    
T  15832650 tgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 23128123 - 23128222
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||| || || ||| |||| |||||| |||||||| |||||||||||||   |||||| |||| ||| | ||||||| ||||||    
T  23128123 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcat 23128222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 28536519 - 28536581
Alignment:
Q  46 cgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| |||||||| ||||||||||||    ||||||| ||||||||||||| ||||||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 22422084 - 22422119
Alignment:
Q  79 tattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||| |||||||||||||||||||||||| |||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-21; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 33118841 - 33118956
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||| || || || || ||| |||| |||||| | |||||| |||||||||||||  |||||||||||||||||| ||||||||    
T  33118841 gagaggaaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatg 33118940  T
Q  103 tatcataactcttaat 118  Q
    ||||||||||||||||    
T  33118941 tatcataactcttaat 33118956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 49607518 - 49607412
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||| || || ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  49607518 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 49607419  T
Q  109 aactctt 115  Q
     ||||||    
T  49607418 tactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 26141559 - 26141632
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    ||||||||||| |||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||||||||    
T  26141559 tgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 11347952 - 11348024
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||||| |||||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||    
T  11347952 ccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 53982115 - 53982011
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  53982115 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 53982016  T
Q  109 aactc 113  Q
     ||||    
T  53982015 tactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 24699984 - 24700055
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||  ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||    
T  24699984 ccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 41189760 - 41189867
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||  || |||||||| | ||||||||||||||||||||   ||||||| ||||||||||||| ||||||||||    
T  41189760 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcat 41189859  T
Q  109 aactctta 116  Q
    ||||||||    
T  41189860 aactctta 41189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 54868927 - 54868998
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||||| |||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||    
T  54868927 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 8076503 - 8076393
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||||||  | ||| |||| ||||||||||||||| |||||||||||||  ||||| || ||||||||| ||| ||||    
T  8076503 gagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatg 8076404  T
Q  103 tatcataactc 113  Q
    |||||| ||||    
T  8076403 tatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 11095380 - 11095458
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactcttaat 118  Q
    |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| |||||||||||||| |||||||||    
T  11095380 tgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttaat 11095458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 14623830 - 14623944
Alignment:
Q  4 agatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgt 103  Q
    |||||||||| ||| |||||||||| |   | ||| ||| ||| ||| |||||||||||||||||||||   |||||||| |||||||||||||||||||    
T  14623830 agatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgt 14623929  T
Q  104 atcataactcttaat 118  Q
    ||||| |||| ||||    
T  14623930 atcattactcctaat 14623944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 35536699 - 35536625
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||||||| | ||||||||||||||||||||  |||||||| ||| |||||||||||||||||||| |||||    
T  35536699 tgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 33644304 - 33644200
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| |||| |||| ||||||||||||||    
T  33644304 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcat 33644205  T
Q  109 aactc 113  Q
     ||||    
T  33644204 tactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 47531969 - 47531865
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  ||||  || |||||||| ||||| || ||||| ||| |||| |||||||| || |||||||||||||||||||||    
T  47531969 aaagagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcat 47531870  T
Q  109 aactc 113  Q
    |||||    
T  47531869 aactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 52629404 - 52629304
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||||| |||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  52629404 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T
Q  109 a 109  Q
    |    
T  52629304 a 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 48587087 - 48587186
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||| ||||||||| || ||| |||| |||||| |||||||||||| |||||||||  |||||||| ||||||||| | ||||||||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 20764945 - 20765015
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||| |||||||| ||||||||| ||| ||||||||  ||||||||||||||||||| |||||||||    
T  20764945 ccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 51419390 - 51419460
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||| |||||||| ||||||||| |||   |||||||||| ||||||||||||||||||||||||||    
T  51419390 ccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 17470509 - 17470404
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||| ||  | ||| |||| |||||| |||||||| ||||||||| |||| |||||||| ||||||| | ||||||||||||||    
T  17470509 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcat 17470410  T
Q  109 aactct 114  Q
     |||||    
T  17470409 tactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 27714888 - 27714993
Alignment:
Q  10 aagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcata 109  Q
    |||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||  ||||||| | ||||||||||||||     
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatt 27714987  T
Q  110 actctt 115  Q
    ||||||    
T  27714988 actctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 35965804 - 35965877
Alignment:
Q  43 ccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctta 116  Q
    |||||||| ||||||||||||||||||||||   |||||| |||| ||||||||| |||||||||| |||||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctta 35965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 13898046 - 13898150
Alignment:
Q  4 agatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgt 103  Q
    |||||||||| ||| |||||||||| |   | ||| ||| ||||||| |||||||||||||||||||||   |||||||| ||||||||||||| ||| |    
T  13898046 agatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatct 13898145  T
Q  104 atcat 108  Q
    |||||    
T  13898146 atcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 11907475 - 11907368
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||  ||||||| ||| |||||||| |||| ||||  |   |||||||||||||||||| ||||||||||||||    
T  11907475 aaagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcat 11907376  T
Q  109 aactctta 116  Q
    ||||||||    
T  11907375 aactctta 11907368  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 31456793 - 31456694
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| |||||||||||||  | ||| |||| |||||| |||||||| |||||||||||||  |||||||| | |||| || ||||||||||||||    
T  31456793 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 35093694 - 35093583
Alignment:
Q  4 agatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgt 103  Q
    ||||| |||| ||| |||||||||  ||| ||||| ||||||| ||| ||||||||  |||| |||||||   ||||||||||||||| | |||||||||    
T  35093694 agatgcaagagaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgt 35093595  T
Q  104 atcataactctt 115  Q
    ||| ||||||||    
T  35093594 atcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 8956831 - 8956761
Alignment:
Q  44 cacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    ||||||| | ||||||||||||||||||||   ||||||| ||| |||||||||||||||||||| |||||    
T  8956831 cacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 36707456 - 36707526
Alignment:
Q  45 acgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||||| |||||||| ||||| |||||||  |||||||||||||||||| | |||||||||||| ||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 26754805 - 26754698
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| |||||||||||||  | ||  ||||||| ||| |||||||| ||||| |||| ||  |||||||| ||||||||| ||||||||    
T  26754805 gagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatg 26754706  T
Q  103 tatcataa 110  Q
     |||||||    
T  26754705 aatcataa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 45058592 - 45058652
Alignment:
Q  52 agatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||||||||||||||||||   |||||||| ||||||||| ||| |||||||||||||||    
T  45058592 agatttttatgtgggtgtcaagg-gtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 30801774 - 30801828
Alignment:
Q  54 atttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    |||||| ||||||| |||||  ||||||| |||||||||| ||||||||||||||    
T  30801774 atttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 48375769 - 48375807
Alignment:
Q  76 gtgtattgtcacctaaggatgtctatgtatcataactct 114  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48375769 gtgtattgtcacctaagggtgtctatgaatcataactct 48375807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 919 - 1029
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| ||||||||||||| |||||| |||| |||||| || ||||| ||||| ||| |||  |||||||| ||||||| ||||||||||    
T  919 gagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatg 1018  T
Q  103 tatcataactc 113  Q
    |||||| ||||    
T  1019 tatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 919 - 1029
Alignment:
Q  3 gagatgaaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatg 102  Q
    |||| |||||| ||| ||||||||||||| |||||| |||| |||||| || ||||| ||||| ||| |||  |||||||| ||||||| ||||||||||    
T  919 gagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatg 1018  T
Q  103 tatcataactc 113  Q
    |||||| ||||    
T  1019 tatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 10136 - 10211
Alignment:
Q  40 tgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactctt 115  Q
    |||| |||||| |||||||||||||| |||||||   ||||||| ||||||| | |||||||||||||||||||||    
T  10136 tgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 4133 - 4029
Alignment:
Q  9 aaagataaattgtgcttgtgcggaattcacctgaccacgtgttagatttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcat 108  Q
    ||||| ||| ||||||| ||||| || ||| | || |||||| |||||||| ||||||||| |||| |||||||| || |||| | ||||||||||||||    
T  4133 aaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcat 4034  T
Q  109 aactc 113  Q
     ||||    
T  4033 tactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 8904 - 8963
Alignment:
Q  54 atttttatgtgggtgtcaaaaagtgtattgtcacctaaggatgtctatgtatcataactc 113  Q
    |||||| ||| | ||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  8904 atttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcataactc 8963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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