View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-15 (Length: 142)
Name: Solexa-NF5709-15
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 8e-50; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 1900782 - 1900643
Alignment:
| Q |
3 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
102 |
Q |
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| T |
1900782 |
cagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccag |
1900683 |
T |
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| Q |
103 |
agctaagctcctccagtcctcctagataagagatgactct |
142 |
Q |
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| T |
1900682 |
agctaagcttctccagtcctcctagataagagatgactct |
1900643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 1910228 - 1910089
Alignment:
| Q |
3 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
102 |
Q |
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| T |
1910228 |
cagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccag |
1910129 |
T |
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| Q |
103 |
agctaagctcctccagtcctcctagataagagatgactct |
142 |
Q |
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| T |
1910128 |
agctaagcttctccagtcctcctagataagagatgactct |
1910089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 1893880 - 1893770
Alignment:
| Q |
3 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
102 |
Q |
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| T |
1893880 |
cagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccag |
1893781 |
T |
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| Q |
103 |
agctaagctcc |
113 |
Q |
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| T |
1893780 |
agcaaagctcc |
1893770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 1903326 - 1903216
Alignment:
| Q |
3 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
102 |
Q |
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|||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| || |||||||||||| || ||| |
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| T |
1903326 |
cagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccag |
1903227 |
T |
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| Q |
103 |
agctaagctcc |
113 |
Q |
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||| ||||||| |
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| T |
1903226 |
agcaaagctcc |
1903216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 2934531 - 2934605
Alignment:
| Q |
41 |
aaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctc |
115 |
Q |
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| T |
2934531 |
aaatggaatgtattatttatgaaaaaggaaaattaccgttgaacggtactcctactgcccagaggaaagctcctc |
2934605 |
T |
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