View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-16 (Length: 148)
Name: Solexa-NF5709-16
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-16 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 7670723 - 7670851
Alignment:
| Q |
7 |
aagagatccgtaacatggtagagataaataaataatcatatcatctacgtcatcttttcctccatgaccatctctattatcatgttctctctaccaattc |
106 |
Q |
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| T |
7670723 |
aagagatccgtaaaatggtagagataaataaataatcatatcatctacgtcatcttttcctccataaccatctctattatcatgttctctctaccaattc |
7670822 |
T |
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| Q |
107 |
tttatttttcatccatcttttgatcgtct |
135 |
Q |
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|| ||||||||||||||| |||| ||||| |
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| T |
7670823 |
ttcatttttcatccatctattgagcgtct |
7670851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 45792443 - 45792332
Alignment:
| Q |
7 |
aagagatccgtaacatggtagagataaataaataatcatatcatctacgtcatcttttcctccatgaccatctctattatcatgttctctctaccaattc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792443 |
aagagatccgtaacatggtagagataaataaataatcatatcatctacgtcatcttttcctccatgaccatctctattatcatgttctctctaccaattc |
45792344 |
T |
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| Q |
107 |
tttatttttcat |
118 |
Q |
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|| ||||||||| |
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| T |
45792343 |
ttcatttttcat |
45792332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 40029157 - 40029271
Alignment:
| Q |
17 |
taacatggtagagataaataaataatcatatcatctacgtcatc-ttttcctccatgaccatctctattatcatgttctctctaccaattctttattttt |
115 |
Q |
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|||||||||||||| |||| || |||| ||| ||||| ||| | ||||||||||| || |||||||||||||||||||||||||||||| || ||||| |
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| T |
40029157 |
taacatggtagagagaaatcgatcatcagatcctctacctcaacattttcctccataactatctctattatcatgttctctctaccaattattccttttt |
40029256 |
T |
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| Q |
116 |
catccatcttttgat |
130 |
Q |
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| ||||||||||||| |
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| T |
40029257 |
cttccatcttttgat |
40029271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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