View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-17 (Length: 142)
Name: Solexa-NF5709-17
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-17 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 1e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 22077354 - 22077215
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22077354 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
22077255 |
T |
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| Q |
103 |
aagtaataagagaatattgtgagagggaacaatttgcgta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22077254 |
aagtaataagagaatattgtgagagggaacaatttgcgta |
22077215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 31210892 - 31210854
Alignment:
| Q |
33 |
actctaggaattgattgatgagcttggaaaatatttgta |
71 |
Q |
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||||||||||||||||||| | ||||||||||||||||| |
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| T |
31210892 |
actctaggaattgattgataaacttggaaaatatttgta |
31210854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 68997 - 68859
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68997 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttg-aaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
68899 |
T |
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| Q |
103 |
aagtaataagagaatattgtgagagggaacaatttgcgta |
142 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
68898 |
aagtaataagagaatattgcgagagggaacaatttgcgta |
68859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 40458626 - 40458553
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458626 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
40458553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 40447132 - 40446993
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40447132 |
taggacatacacgaattttgtgaggaataaactctaggagttgattgatgagcttggaaaaaatttgtatacaaaatgatttgtgtagtcaaagaatagg |
40447033 |
T |
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| Q |
103 |
aagtaataagagaatattgtgagagggaacaatttgcgta |
142 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
40447032 |
aagtaataagagaatactgtgagagggaacaatttgcgta |
40446993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 337759 - 337620
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337759 |
taggacatacacgaattttgtgaggaataaactctaggagttgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
337660 |
T |
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| Q |
103 |
aagtaataagagaatattgtgagagggaacaatttgcgta |
142 |
Q |
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|||||||||||||||| |||||||||||| |||||||||| |
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| T |
337659 |
aagtaataagagaatactgtgagagggaataatttgcgta |
337620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 43408286 - 43408359
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408286 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
43408359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 37667677 - 37667742
Alignment:
| Q |
3 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatattt |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667677 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatattt |
37667742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 194528 - 194489
Alignment:
| Q |
37 |
taggaattgattgatgagcttggaaaatatttgtatacaa |
76 |
Q |
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||||||||||||||| | |||| ||||||||||||||||| |
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| T |
194528 |
taggaattgattgataaacttgaaaaatatttgtatacaa |
194489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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