View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-20 (Length: 133)
Name: Solexa-NF5709-20
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 9e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14332845 - 14332713
Alignment:
| Q |
1 |
cctaaaaagtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332845 |
cctaagaagtcaattgagctcttgatcagatttgattcctttgctgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
14332746 |
T |
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| Q |
101 |
caaatgttaatggatttagaaccctgcaatata |
133 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
14332745 |
caaatgttaatggatttagaaccctgcaatata |
14332713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 5e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25327302 - 25327432
Alignment:
| Q |
1 |
cctaaaaagtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
100 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
25327302 |
cctaagaagtcaattgagttcttgatcagatttgattcctttattgtgaaggaaggaagccttgatccagcattctttttcattatatcaggataatcac |
25327401 |
T |
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| Q |
101 |
caaatgttaatggatttagaaccctgcaata |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25327402 |
caaatgttaatggatttagaaccctgcaata |
25327432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 9989816 - 9989692
Alignment:
| Q |
9 |
gtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcaccaaatgtt |
108 |
Q |
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|||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9989816 |
gtcaattgagctcttgattaaatttgattccttcgctgtgaaggaaggaagccttgatccaacattctttttcattatataaggaaaatcaccaaatgtt |
9989717 |
T |
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| Q |
109 |
aatggatttagaaccctgcaatata |
133 |
Q |
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| T |
9989716 |
tatggatttagaaccctgcaatata |
9989692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 25321687 - 25321818
Alignment:
| Q |
1 |
cctaaaaagtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
100 |
Q |
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||||| ||||| ||||||| ||| || ||| ||||||||||| |||||| |||||||| ||||||||| |||||||| ||||||||| |||||| |||| |
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| T |
25321687 |
cctaagaagtccattgagccctttataagacttgattccttttttgtgaaagaaggaagtcttgatccagcattctttctcattatatcaggatattcac |
25321786 |
T |
|
| Q |
101 |
caaatgttaatggatttagaaccctgcaatat |
132 |
Q |
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||||| | ||||| ||||| | ||| |||||| |
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| T |
25321787 |
caaatataaatgggtttaggaacctacaatat |
25321818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21725895 - 21725790
Alignment:
| Q |
1 |
cctaaaaagtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
100 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21725895 |
cctaagaagtcaattgagctcttgatcagatttgattcctttgctgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
21725796 |
T |
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| Q |
101 |
caaatg |
106 |
Q |
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|||||| |
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| T |
21725795 |
caaatg |
21725790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21805620 - 21805515
Alignment:
| Q |
1 |
cctaaaaagtcaattgagctcttgatcagatttgattcctttgatgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21805620 |
cctaagaagtcaattgagctcttgatcagatttgattcctttgctgtgaaggaaggaagccttgatccaacattctttttcattatataaggataatcac |
21805521 |
T |
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| Q |
101 |
caaatg |
106 |
Q |
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|||||| |
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| T |
21805520 |
caaatg |
21805515 |
T |
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