View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-21 (Length: 118)
Name: Solexa-NF5709-21
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-21 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 7e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42209157 - 42209048
Alignment:
| Q |
1 |
gaggatcctcttctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatttttctatacgc |
100 |
Q |
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| T |
42209157 |
gaggatcctcttctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatttttctatacgc |
42209058 |
T |
|
| Q |
101 |
atcggtcata |
110 |
Q |
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|||||||||| |
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| T |
42209057 |
atcggtcata |
42209048 |
T |
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