View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-22 (Length: 122)
Name: Solexa-NF5709-22
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-22 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 12217242 - 12217352
Alignment:
| Q |
8 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217242 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
12217341 |
T |
|
| Q |
108 |
tttaatctctg |
118 |
Q |
| |
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||||||||||| |
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| T |
12217342 |
tttaatctctg |
12217352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 7428438 - 7428328
Alignment:
| Q |
8 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7428438 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattc |
7428339 |
T |
|
| Q |
108 |
tttaatctctg |
118 |
Q |
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||||||||||| |
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| T |
7428338 |
tttaatctctg |
7428328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 7325169 - 7325118
Alignment:
| Q |
67 |
ttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
118 |
Q |
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|||||||| |||||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
7325169 |
ttactcatacagcttcggtgcctctgtaagttcttcaattctttaatttctg |
7325118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 7443766 - 7443715
Alignment:
| Q |
67 |
ttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
118 |
Q |
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|||||||| || ||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
7443766 |
ttactcatacaacttcggtgcctctgtaagttcttcaattctttaatttctg |
7443715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 772308 - 772246
Alignment:
| Q |
56 |
ttccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
118 |
Q |
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|||| |||||||||||| | ||||||||||||||||| |||||||| ||| || |||| |||| |
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| T |
772308 |
ttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaatactctaatatctg |
772246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 2455123 - 2455167
Alignment:
| Q |
64 |
aagttactcattcagcttcgctgcctctgtaagtccttcaattct |
108 |
Q |
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| T |
2455123 |
aagttactcgtgcagcttcgctgcctctgcaagtcctttaattct |
2455167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 24418290 - 24418191
Alignment:
| Q |
19 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
118 |
Q |
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||||| || |||||||| || || ||| ||||||| |||| || ||||||||| |||| |||||||| ||||| |||||||||||||| |||||||||| |
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| T |
24418290 |
cttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatctctg |
24418191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 33037366 - 33037476
Alignment:
| Q |
8 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
107 |
Q |
| |
|
|||||||||| |||||||||||||| || || |||||| | || ||| |||||||||| | |||||||| ||||| || ||||||||||| ||||||| |
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| T |
33037366 |
cactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaattc |
33037465 |
T |
|
| Q |
108 |
tttaatctctg |
118 |
Q |
| |
|
||||| |||| |
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| T |
33037466 |
gttaatttctg |
33037476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 1365 - 1475
Alignment:
| Q |
8 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
107 |
Q |
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||||||||| |||||||| ||||||||||| ||||| |||||||| |||| || || |||||| |||| |||||||| |||| ||||| ||||| || |
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| T |
1365 |
cactacccagtcttccgttagatcttgttgccgaaatcctgtgtagacttcccgtgaaattactccttcaatttcgctgcgtctgcaagtctttcaaatc |
1464 |
T |
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| Q |
108 |
tttaatctctg |
118 |
Q |
| |
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||||| |||| |
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| T |
1465 |
gttaatttctg |
1475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 3859 - 3969
Alignment:
| Q |
8 |
cactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattc |
107 |
Q |
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|
||||||||| |||||||| ||||||||||| ||||| ||||||| |||| || || |||||| |||| |||||||| |||| ||||| ||||| || |
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| T |
3859 |
cactacccagtcttccgttagatcttgttgccgaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctgcgtctgcaagtctttcaaatc |
3958 |
T |
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| Q |
108 |
tttaatctctg |
118 |
Q |
| |
|
||||| |||| |
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|
| T |
3959 |
cttaatttctg |
3969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 27754913 - 27754965
Alignment:
| Q |
64 |
aagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctc |
116 |
Q |
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|||||||| |||| ||| | ||||||||||||||||| |||||||||||||| |
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|
| T |
27754913 |
aagttactacttcaactttgatgcctctgtaagtcctttaattctttaatctc |
27754965 |
T |
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