View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-23 (Length: 127)
Name: Solexa-NF5709-23
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 4365480 - 4365599
Alignment:
| Q |
8 |
caattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtctcg |
107 |
Q |
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| T |
4365480 |
caattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtctcg |
4365579 |
T |
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| Q |
108 |
tatcaaaactccaagtaatt |
127 |
Q |
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| T |
4365580 |
tatcaaaactccaagtaatt |
4365599 |
T |
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Target: chr6 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 33652421 - 33652513
Alignment:
| Q |
11 |
ttaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtc |
104 |
Q |
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| T |
33652421 |
ttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaatttactagagataaccaattagcatacgaaggcgatgcaattggtc |
33652513 |
T |
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