View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5709-25 (Length: 127)

Name: Solexa-NF5709-25
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5709-25
Solexa-NF5709-25
[»] chr5 (2 HSPs)
chr5 (10-127)||(14868479-14868596)
chr5 (60-127)||(6612086-6612153)
[»] chr6 (3 HSPs)
chr6 (58-127)||(19153649-19153718)
chr6 (60-123)||(10303482-10303545)
chr6 (60-127)||(24638890-24638957)
[»] chr4 (1 HSPs)
chr4 (7-127)||(19233146-19233266)
[»] chr7 (1 HSPs)
chr7 (66-127)||(10275190-10275251)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 14868479 - 14868596
Alignment:
Q  10 aaataccaacccatcaaagaatacaatgccaaacagactcnnnnnnncaacaatgtaaaaataaatgagtgacagtttccagagagcaacacccactagc 109  Q
    ||||||||||||||| |||||||||| || ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14868479 aaataccaacccatcgaagaatacaaggctaaacagactcaaaaaaacaacaatgtaaaaataaatgagtgacagtttccagagagcaacacccactagc 14868578  T
Q  110 acacagacaagaatcatt 127  Q
    ||||||||||||||||||    
T  14868579 acacagacaagaatcatt 14868596  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 6612153 - 6612086
Alignment:
Q  60 caatgtaaaaataaatgagtgacagtttccagagagcaacacccactagcacacagacaagaatcatt 127  Q
    |||||||||||||||||| ||||||||||| |||||| ||| ||| || ||||  |||||||||||||    
T  6612153 caatgtaaaaataaatgattgacagtttccggagagccacatccagtaacacagggacaagaatcatt 6612086  T

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Target: chr6 (Bit Score: 46; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 19153649 - 19153718
Alignment:
Q  58 aacaatgtaaaaataaatgagtgacagtttccagagagcaacacccactagcacacagacaagaatcatt 127  Q
    |||||||||||||||||||| |||||||||| ||||||| ||| ||| || |||||||||||||||||||    
T  19153649 aacaatgtaaaaataaatgattgacagtttctagagagccacatccagtaacacacagacaagaatcatt 19153718  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 10303482 - 10303545
Alignment:
Q  60 caatgtaaaaataaatgagtgacagtttccagagagcaacacccactagcacacagacaagaat 123  Q
    ||||||||||||||||||| | |||| |||||||||| ||||| ||||||||||||||||||||    
T  10303482 caatgtaaaaataaatgagaggcagtctccagagagccacacctactagcacacagacaagaat 10303545  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 24638957 - 24638890
Alignment:
Q  60 caatgtaaaaataaatgagtgacagtttccagagagcaacacccactagcacacagacaagaatcatt 127  Q
    |||||||||||||||||| ||||||||| |||||||| |||  || || |||| ||||||||||||||    
T  24638957 caatgtaaaaataaatgattgacagttttcagagagccacattcagtaacacagagacaagaatcatt 24638890  T

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Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 19233266 - 19233146
Alignment:
Q  7 aagaaataccaacccatcaaagaatacaatgccaaacagactcnnnnnnncaacaatgtaaaaataaatgagtgacagtttccagagagcaacacccact 106  Q
    |||| ||||||||||||| ||||||| | |||||||||||| |       || ||||||||||||||||||||| | || || ||||||| ||| |||||    
T  19233266 aagagataccaacccatcgaagaataaagtgccaaacagacccaaaaatgcagcaatgtaaaaataaatgagtgccggtctctagagagccacatccact 19233167  T
Q  107 agcacacagacaagaatcatt 127  Q
    |||||| ||||||| ||||||    
T  19233166 agcacatagacaagtatcatt 19233146  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 10275251 - 10275190
Alignment:
Q  66 aaaaataaatgagtgacagtttccagagagcaacacccactagcacacagacaagaatcatt 127  Q
    ||||||||||| ||| |||| ||||||| || ||| || |||||||||||||||||||||||    
T  10275251 aaaaataaatgggtggcagtctccagagggccacaaccgctagcacacagacaagaatcatt 10275190  T

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