View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5709-26 (Length: 127)

Name: Solexa-NF5709-26
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5709-26
Solexa-NF5709-26
[»] chr3 (5 HSPs)
chr3 (11-127)||(1900362-1900478)
chr3 (11-127)||(1909808-1909924)
chr3 (11-127)||(2934833-2934949)
chr3 (85-127)||(1893501-1893543)
chr3 (85-127)||(1902947-1902989)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 7e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 1900362 - 1900478
Alignment:
Q  11 tatgcatacaataagatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  1900362 tatgcatacaataagatgaccggaagactgcaatgacttctataaaagacaagtgaagaaagttgttcaacgttgttaagaggggtataaaaaaggtcac 1900461  T
Q  111 agggagaagaccaataa 127  Q
    |||||||||||||||||    
T  1900462 agggagaagaccaataa 1900478  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 1909808 - 1909924
Alignment:
Q  11 tatgcatacaataagatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  1909808 tatgcatacaataagatgaccggaagactgcaatgacttctataaaagacaagtgaagaaagttgttcaacgttgttaagaggggtataaaaaaggtcac 1909907  T
Q  111 agggagaagaccaataa 127  Q
    |||||||||||||||||    
T  1909908 agggagaagaccaataa 1909924  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 2934949 - 2934833
Alignment:
Q  11 tatgcatacaataagatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcac 110  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||    
T  2934949 tatgcatacaatgagatgactggaaaactgcaatgacttctatacaagacaagtgaagaaaattgttcaacattgttaagaggggtataaaaaaggtcac 2934850  T
Q  111 agggagaagaccaataa 127  Q
    |||||||||||||||||    
T  2934849 agggagaagaccaataa 2934833  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 1893501 - 1893543
Alignment:
Q  85 gttaagaggggtataaaaaaggtcacagggagaagaccaataa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1893501 gttaagaggggtataaaaaaggtcacagggagaagaccaataa 1893543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 1902947 - 1902989
Alignment:
Q  85 gttaagaggggtataaaaaaggtcacagggagaagaccaataa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1902947 gttaagaggggtataaaaaaggtcacagggagaagaccaataa 1902989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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