View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-27 (Length: 127)
Name: Solexa-NF5709-27
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-27 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 68579 - 68699
Alignment:
| Q |
7 |
aataatagcaacagttatatttccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68579 |
aataatagcaacagttatatatccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
68678 |
T |
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| Q |
107 |
atacgagttcatggtgaaaat |
127 |
Q |
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| T |
68679 |
atacgagttcatggtgaaaat |
68699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 22076945 - 22077054
Alignment:
| Q |
18 |
cagttatatttccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagcatacgagttca |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22076945 |
cagttatatatccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagcatacgagttca |
22077044 |
T |
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| Q |
118 |
tggtgaaaat |
127 |
Q |
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|||||||||| |
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| T |
22077045 |
tggtgaaaat |
22077054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 40446713 - 40446833
Alignment:
| Q |
7 |
aataatagcaacagttatatttccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
106 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40446713 |
aataatagcaacagttatatatccttctgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
40446812 |
T |
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| Q |
107 |
atacgagttcatggtgaaaat |
127 |
Q |
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||| || |||||||||||||| |
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| T |
40446813 |
atatgaattcatggtgaaaat |
40446833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 337340 - 337460
Alignment:
| Q |
7 |
aataatagcaacagttatatttccttttgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
106 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337340 |
aataatagcaacagttatatatccttctgcgtataaaaagtataggacgtgagtgtaggagagttaccagccagttctaactcagcctatacatatgagc |
337439 |
T |
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| Q |
107 |
atacgagttcatggtgaaaat |
127 |
Q |
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||| || |||||||||||||| |
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| T |
337440 |
atatgaattcatggtgaaaat |
337460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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