View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-29 (Length: 134)
Name: Solexa-NF5709-29
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-29 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 5e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 4332554 - 4332429
Alignment:
| Q |
7 |
agagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacattgtactttcttatactgtgaatatcaaaccgatcttttgga |
106 |
Q |
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| T |
4332554 |
agagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatcgtactttcttatactatgaatatcaaaccgatcttttgga |
4332455 |
T |
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| Q |
107 |
gcgaacatgtcatcaacttctatgtt |
132 |
Q |
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| T |
4332454 |
gcgaacatgtcatcagcgtctatgtt |
4332429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 4356650 - 4356588
Alignment:
| Q |
14 |
tgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacattgtactttctt |
76 |
Q |
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| T |
4356650 |
tgtgaagtgaatgatgctctagtgtcttctcctctaaaactcaaaaacacatcgtactttctt |
4356588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 5092851 - 5092790
Alignment:
| Q |
2 |
gaagcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac |
63 |
Q |
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| T |
5092851 |
gaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacac |
5092790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 5160691 - 5160750
Alignment:
| Q |
4 |
agcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac |
63 |
Q |
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| T |
5160691 |
agcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacac |
5160750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5149892 - 5149954
Alignment:
| Q |
1 |
agaagcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac |
63 |
Q |
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||||||| |||| |||||||||||||||||||| || |||| ||||||||||| |||||||| |
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| T |
5149892 |
agaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacac |
5149954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5422117 - 5422053
Alignment:
| Q |
1 |
agaagcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat |
65 |
Q |
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| T |
5422117 |
agaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacat |
5422053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5070607 - 5070671
Alignment:
| Q |
1 |
agaagcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat |
65 |
Q |
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| T |
5070607 |
agaagcatagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacat |
5070671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 5340465 - 5340406
Alignment:
| Q |
4 |
agcagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac |
63 |
Q |
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| T |
5340465 |
agcatagagatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacac |
5340406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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