View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-30 (Length: 121)
Name: Solexa-NF5709-30
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29201825 - 29201705
Alignment:
| Q |
1 |
aagagtacccaccaaatcaccagcaaaaccacccaaatcagaatcaacttcttcctttagtttttcaaacttagctctaatctcctccatgatttcctgt |
100 |
Q |
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| T |
29201825 |
aagagtacccaccaaatcaccagcaaaaccacccaaatcagaatcaacttcttcctttagtttttcaaacttagctctaatctcctccatgatttcctgt |
29201726 |
T |
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| Q |
101 |
aacaattcatttcattgaaaa |
121 |
Q |
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||||||||||||||||||||| |
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| T |
29201725 |
aacaattcatttcattgaaaa |
29201705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 12650062 - 12650182
Alignment:
| Q |
1 |
aagagtacccaccaaatcaccagcaaaaccacccaaatcagaatcaacttcttcctttagtttttcaaacttagctctaatctcctccatgatttcctgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12650062 |
aagagtacccaccaaatcaccagcaaaaccacccaaatcagaatcaacttcttcctttagtttttcaaacttagctctaatctccaccatgatttcctgt |
12650161 |
T |
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| Q |
101 |
aacaattcatttcattgaaaa |
121 |
Q |
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||||||||||||||||||||| |
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| T |
12650162 |
aacaattcatttcattgaaaa |
12650182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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