View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-33 (Length: 114)
Name: Solexa-NF5709-33
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-33 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 9989080 - 9989187
Alignment:
| Q |
8 |
acaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatg |
106 |
Q |
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| T |
9989080 |
acaaatacaaggtcagtgactatagagtacacacacatatgttattagcacatgcttcagctgcaacgttgtataagaaaaaatataaggtaaatttatg |
9989179 |
T |
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| Q |
107 |
tagaaaat |
114 |
Q |
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|||||||| |
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| T |
9989180 |
tagaaaat |
9989187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 9e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 9e-43
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 14332113 - 14332220
Alignment:
| Q |
8 |
acaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatg |
106 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14332113 |
acaaatacaaggtcagtgactatagagtatacacacatatgttattagcacatgcttgagctgcaatgttgtataagaaaaaatataaggtaaatttatg |
14332212 |
T |
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| Q |
107 |
tagaaaat |
114 |
Q |
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|||||||| |
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| T |
14332213 |
tagaaaat |
14332220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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