View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-35 (Length: 130)
Name: Solexa-NF5709-35
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 48648251 - 48648129
Alignment:
| Q |
8 |
gtatgtctattaatagtcattttgttctatgaatttgtaacgagtagccataatagttataaaatatataaaaatttcaaaatagtttttaactatgcac |
107 |
Q |
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| T |
48648251 |
gtatgtctattaatagtcattttgttctatgaatttgtaacgagtaaccataatagttataaaatatatcgaaattttaaaatagtttttaactatgcat |
48648152 |
T |
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| Q |
108 |
ttcatttatcaaaatagtctatt |
130 |
Q |
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| T |
48648151 |
ttcatttatcaaaatagtctatt |
48648129 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 11839768 - 11839843
Alignment:
| Q |
18 |
taatagtcattttgttctatgaatttgtaacgagtagccataatagttataaaatatataaaaatttcaaaatagt |
93 |
Q |
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| T |
11839768 |
taatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaatagt |
11839843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 34105828 - 34105778
Alignment:
| Q |
79 |
aaatttcaaaatagtttttaactatgcacttcatttatcaaaatagtctat |
129 |
Q |
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| T |
34105828 |
aaatttgaaaatagtttttcactgtgcacttccttaatcaaaatagtctat |
34105778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 29911681 - 29911573
Alignment:
| Q |
19 |
aatagtcattttgttctatgaatttgtaacgagtagccataatagttataaaatatataaaaatttcaaaatagtttttaactatgcacttcatttatca |
118 |
Q |
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|||||||||||| ||| ||||| |||||||||| |||| ||||||| | ||| ||| ||||||| ||||||||| ||| | | |||||| || ||| |
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| T |
29911681 |
aatagtcattttcatctctgaatgtgtaacgagtggccacaatagttgtttaatgtatcaaaattttaaaatagttcataagtgtccacttcgttagtca |
29911582 |
T |
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| Q |
119 |
aaatagtct |
127 |
Q |
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| T |
29911581 |
aaatagtct |
29911573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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